Gene detail

Detailed information of evm.model.Chr17.237 in Hemicorallium imperiale

Genomic Location: Chr17:5539153...5543239
NR annotation: XP_028398265.1, uncharacterized protein LOC114521889 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr17.237 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000631 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09092 all species →	Lyase_N	Lyase, N terminal	Domain	Interproscan
PF02278 all species →	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan
PF09093 all species →	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR015176 all species →	Domain	Lyase, N-terminal	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR003159 all species →	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR015177 all species →	Domain	Lyase, catalytic	Interproscan
IPR011071 all species →	Homologous_superfamily	Polysaccharide lyase family 8-like, C-terminal	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR014718 all species →	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR039174 all species →	Family	Chondroitin sulfate ABC lyase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08961	K08961; chondroitin-sulfate-ABC endolyase/exolyase	EC:4.2.2.20 EC:4.2.2.21	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.