Detailed information of evm.model.Chr17.277 in Hemicorallium imperiale

Genomic Location: Chr17:6307870...6370109
NR annotation: CAB3983204.1, Hypothetical predicted protein [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.277 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2KJ34HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 PE=2 SV=1
O60381HMG box-containing protein 1 OS=Homo sapiens OX=9606 GN=HBP1 PE=1 SV=2
Q8R316HMG box-containing protein 1 OS=Mus musculus OX=10090 GN=Hbp1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002479 (this species only) · gene tree & orthology
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR039655
all species →		FamilyHMG box-containing protein 1Interproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15499
all species →		HMG BOX-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr17.277.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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