Detailed information of evm.model.Chr17.283 in Hemicorallium imperiale

Genomic Location: Chr17:6646278...6678079
NR annotation: CAB3998693.1, DNA repair complementing XP-C cells [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.283 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q24595DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster OX=7227 GN=Xpc PE=1 SV=2
Q01831DNA repair protein complementing XP-C cells OS=Homo sapiens OX=9606 GN=XPC PE=1 SV=4
P51612DNA repair protein complementing XP-C cells homolog OS=Mus musculus OX=10090 GN=Xpc PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004584 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10405
all species →		BHD_3Rad4 beta-hairpin domain 3DomainInterproscan
PF03835
all species →		Rad4Rad4 transglutaminase-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042488
all species →		Homologous_superfamilyRad4, beta-hairpin domain 3 superfamilyInterproscan
IPR018328
all species →		DomainRad4 beta-hairpin domain 3Interproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR018327
all species →		DomainRad4 beta-hairpin domain 2Interproscan
IPR004583
all species →		FamilyDNA repair protein Rad4Interproscan
IPR018325
all species →		DomainRad4/PNGase transglutaminase-like foldInterproscan
IPR036985
all species →		Homologous_superfamilyTransglutaminase-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12135
all species →		DNA REPAIR PROTEIN XP-C / RAD4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000111
all species →		Cellular Componentnucleotide-excision repair factor 2 complexInterproscan
GO:0003684
all species →		Molecular Functiondamaged DNA bindingInterproscan
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0006298
all species →		Biological Processmismatch repairInterproscan
GO:0071942
all species →		Cellular ComponentXPC complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr17.283.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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