Detailed information of evm.model.Chr17.381 in Hemicorallium imperiale

Genomic Location: Chr17:8943440...8950248
NR annotation: XP_028398170.1, tRNA-splicing ligase RtcB homolog isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.381 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7RKF6RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q5E9T9RNA-splicing ligase RtcB homolog OS=Bos taurus OX=9913 GN=RTCB PE=2 SV=1
Q99LF4RNA-splicing ligase RtcB homolog OS=Mus musculus OX=10090 GN=Rtcb PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003319 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139
all species →		RtcBtRNA-splicing ligase RtcBFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001233
all species →		FamilyRNA-splicing ligase, RtcBInterproscan
IPR036025
all species →		Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan
IPR027513
all species →		FamilyRNA-splicing ligase RtcB homologue, eukaryoticInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11118
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0008452
all species →		Molecular FunctionRNA ligase activityInterproscan
GO:0000971
all species →		Biological Processobsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphateInterproscan
GO:0003972
all species →		Molecular FunctionRNA ligase (ATP) activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0072669
all species →		Cellular ComponenttRNA-splicing ligase complexInterproscan
GO:0006388
all species →		Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14415RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)EC:6.5.1.8
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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