Genomic Location: Chr17:8999806...9003133
NR annotation: XP_028398177.1, histone-lysine N-methyltransferase SUV39H2-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr17.384 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q28CQ7 | Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis OX=8364 GN=suv39h2 PE=2 SV=2 |
| Q5F3W5 | Histone-lysine N-methyltransferase SUV39H2 OS=Gallus gallus OX=9031 GN=SUV39H2 PE=2 SV=1 |
| Q9H5I1 | Histone-lysine N-methyltransferase SUV39H2 OS=Homo sapiens OX=9606 GN=SUV39H2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001165 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00856 all species → | SET | SET domain | Family | Interproscan |
| PF05033 all species → | Pre-SET | Pre-SET motif | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR011381 all species → | Family | Histone-lysine N-methyltransferase SUV39H1/2-like | Interproscan |
| IPR003616 all species → | Domain | Post-SET domain | Interproscan |
| IPR050973 all species → | Family | Histone-lysine N-methyltransferase, H3 Lys-9 specific | Interproscan |
| IPR007728 all species → | Domain | Pre-SET domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46223 all species → | HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0046974 all species → | Molecular Function | histone H3K9 methyltransferase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0042054 all species → | Molecular Function | histone methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11419 | SUV39H, CLR4; [histone H3]-lysine9 N-trimethyltransferase SUV39H | EC:2.1.1.355 | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
