Gene detail

Detailed information of evm.model.Chr17.689 in Hemicorallium imperiale

Genomic Location: Chr17:13270481...13293916
NR annotation: XP_028398013.1, uncharacterized protein LOC114521699 [Dendronephthya gigantea]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q8LHH9	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan