Detailed information of evm.model.Chr17.692 in Hemicorallium imperiale

Genomic Location: Chr17:13313583...13322285
NR annotation: CAB3983161.1, synaptophysin 1 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.692 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WQI7Large ribosomal subunit protein eL20 OS=Spodoptera frugiperda OX=7108 GN=RpL18A PE=2 SV=1
Q90YU9Large ribosomal subunit protein eL20 OS=Ictalurus punctatus OX=7998 GN=rpl18a PE=2 SV=1
P41093Large ribosomal subunit protein eL20 OS=Drosophila melanogaster OX=7227 GN=RpL18A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007316 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01775
all species →		Ribosomal_L18ARibosomal proteins 50S-L18Ae/60S-L20/60S-L18ADomainInterproscan
PF01284
all species →		MARVELMembrane-associating domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023573
all species →		DomainLarge ribosomal subunit protein eL20 domainInterproscan
IPR001285
all species →		FamilySynaptophysin/synaptoporinInterproscan
IPR008253
all species →		DomainMarvel domainInterproscan
IPR028877
all species →		FamilyLarge ribosomal subunit protein eL20Interproscan
IPR021138
all species →		FamilyLarge ribosomal subunit protein eL20, eukaryotesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10052
all species →		60S RIBOSOMAL PROTEIN L18AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0008021
all species →		Cellular Componentsynaptic vesicleInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr17.692.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP