Detailed information of evm.model.Chr17.776 in Hemicorallium imperiale

Genomic Location: Chr17:15362478...15383483
NR annotation: XP_028408063.1, E3 ubiquitin-protein ligase RAD18-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.776 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NS91E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens OX=9606 GN=RAD18 PE=1 SV=2
Q9QXK2E3 ubiquitin-protein ligase RAD18 OS=Mus musculus OX=10090 GN=Rad18 PE=1 SV=2
P33288Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=uvs-2 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004694 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02037
all species →		SAPSAP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003034
all species →		DomainSAP domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR039577
all species →		FamilyE3 ubiquitin-protein ligase Rad18Interproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14134
all species →		E3 UBIQUITIN-PROTEIN LIGASE RAD18Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003697
all species →		Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006301
all species →		Biological Processpostreplication repairInterproscan
GO:0006513
all species →		Biological Processprotein monoubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0097505
all species →		Cellular ComponentRad6-Rad18 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10627RAD18; E3 ubiquitin-protein ligase RAD18EC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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