Detailed information of evm.model.Chr17.789 in Hemicorallium imperiale

Genomic Location: Chr17:15953708...16012036
NR annotation: XP_028408042.1, contactin-6-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.789 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3MHH1Protein SHQ1 homolog OS=Bos taurus OX=9913 GN=SHQ1 PE=2 SV=1
Q6PI26Protein SHQ1 homolog OS=Homo sapiens OX=9606 GN=SHQ1 PE=1 SV=2
Q05B18Protein SHQ1 homolog OS=Xenopus tropicalis OX=8364 GN=shq1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002551 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041
all species →		fn3Fibronectin type III domainDomainInterproscan
PF21413
all species →		SHQ1-like_CSSHQ1-like, CS domainDomainInterproscan
PF04925
all species →		SHQ1SHQ1 protein, Shq1 domainDomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR039742
all species →		FamilyProtein Shq1Interproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR007052
all species →		DomainCS domainInterproscan
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR008978
all species →		Homologous_superfamilyHSP20-like chaperoneInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR048696
all species →		DomainSHQ1-like, CS domainInterproscan
IPR007009
all species →		DomainShq1, C-terminal domainInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12967
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000493
all species →		Biological Processbox H/ACA snoRNP assemblyInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0051082
all species →		Molecular Functionunfolded protein bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr17.789.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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