Detailed information of evm.model.Chr17.858 in Hemicorallium imperiale

Genomic Location: Chr17:18452672...18482896
NR annotation: XP_028408746.1, apoptotic protease-activating factor 1-like isoform X1 [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr17.858 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7XA40Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2
Q9FW44Disease resistance protein ADR1 OS=Arabidopsis thaliana OX=3702 GN=ADR1 PE=1 SV=2
Q7XBQ9Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006398 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17908
all species →		APAF1_CAPAF-1 helical domainDomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF00931
all species →		NB-ARCNB-ARC domainDomainInterproscan
PF01335
all species →		DEDDeath effector domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011029
all species →		Homologous_superfamilyDeath-like domain superfamilyInterproscan
IPR041452
all species →		DomainAPAF-1 helical domainInterproscan
IPR001875
all species →		DomainDeath effector domainInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR050505
all species →		FamilyWD repeat-containing protein WDR55/POC1Interproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR002182
all species →		DomainNB-ARCInterproscan
IPR042197
all species →		Homologous_superfamilyApoptotic protease-activating factors, helical domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44019
all species →		WD REPEAT-CONTAINING PROTEIN 55Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0042981
all species →		Biological Processregulation of apoptotic processInterproscan
GO:0043531
all species →		Molecular FunctionADP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr17.858.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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