Detailed information of evm.model.Chr18.162 in Hemicorallium imperiale

Genomic Location: Chr18:3689870...3789065
NR annotation: CAB3992156.1, E3 ubiquitin- ligase UBR5 isoform X2 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80TP3E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
Q62671E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3
O95071E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens OX=9606 GN=UBR5 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002381 (this species only)
Ubiquitin familyE3|E3 activity|HECT · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity|UBR-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11547
all species →
E3_UbLigase_EDDE3 ubiquitin ligase EDDDomainInterproscan
PF05502
all species →
Dynactin_p62Dynactin p62 familyFamilyInterproscan
PF00632
all species →
HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00069
all species →
PkinaseProtein kinase domainDomainInterproscan
PF00658
all species →
PABPPoly-adenylate binding protein, unique domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003126
all species →
DomainZinc finger, UBR-typeInterproscan
IPR024725
all species →
DomainE3 ubiquitin-protein ligase UBR5, ubiquitin-associated domainInterproscan
IPR002004
all species →
DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan
IPR003527
all species →
Conserved_siteMitogen-activated protein (MAP) kinase, conserved siteInterproscan
IPR047503
all species →
DomainE3 ubiquitin-protein ligase UBR5, UBR-boxInterproscan
IPR009091
all species →
Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR008603
all species →
FamilyDynactin subunit 4Interproscan
IPR000569
all species →
DomainHECT domainInterproscan
IPR035983
all species →
Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR008271
all species →
Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR036053
all species →
Homologous_superfamilyPABC (PABP) domainInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR008351
all species →
FamilyMitogen-activated protein (MAP) kinase, JNKInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46276
all species →
E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0043130
all species →
Molecular Functionubiquitin bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0000209
all species →
Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0034450
all species →
Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263
all species →
Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan
GO:0004707
all species →
Molecular FunctionMAP kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0005869
all species →
Cellular Componentdynactin complexInterproscan
GO:0004842
all species →
Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10593EDD1, UBR5; E3 ubiquitin-protein ligase EDD1EC:2.3.2.26
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP