Genomic Location: Chr18:9910966...9912324
NR annotation: CAB4015952.1, protocadherin Fat 4-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
| CDS |
| evm.model.Chr18.372 |
| Transcript |
| evm.model.Chr18.372 |
| Protein |
| evm.model.Chr18.372 |
| UniProt accession | Description |
|---|---|
| P13944 | Collagen alpha-1(XII) chain OS=Gallus gallus OX=9031 GN=COL12A1 PE=1 SV=3 |
| Q99715 | Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2 |
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007916 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF16754 all species → | Pesticin | Bacterial toxin homologue of phage lysozyme, C-term | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR031922 all species → | Domain | Pesticin, C-terminal | Interproscan |
| IPR023347 all species → | Homologous_superfamily | Lysozyme domain superfamily | Interproscan |
| IPR050525 all species → | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 all species → | COLLAGEN ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003796 all species → | Molecular Function | lysozyme activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01335 | CFB; complement factor B | EC:3.4.21.47 | Peptidases and inhibitors | ko01002 | deepkoala |
