Gene detail

Detailed information of evm.model.Chr18.417 in Hemicorallium imperiale

Genomic Location: Chr18:11179395...11209635
NR annotation: XP_028404319.1, succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Chr18.417

ATGTTGTCCTCATTGAAGACAGGTACTTGGCTTTCAAGACTTACGCTGAACTATCGTACTACCTATACGAAAGTCCTGCCGTCCGTGAGTAGAGCATTTCATTGCGGACAAAGATCAAATGCTACGACAAAGGCAGAGTTTTCGAAGGAGTACCCAGTCATTGACCATTCTTATGACTGTGTTGTGGTCGGTGCTGGTGGAGCTGGACTTCGAGCAGCATTTGGTTTGGCTAATAGTGGATTTAAAACAGCTTGTATCACAAAACTATTTCCCACAAGATCACATACCGTTGCTGCTCAGGGTGGTGTAAATGCTGCATTGGGGAACATGGAACCAGATGATTGGAAATGGCACATGTACGACACAGTGAAGGGTAGTGATTGGTTGGGTGATCAAGACGCGATTCATTACATGACAAAGGAAGCTCCTGAAGCTGTTATTGAGCTTGAAAACTATGGGATGCCATTCAGTCGAACTGATGATGGCAAAATATATCAACGAGCATTTGGTGGCCAAAGCTATGACTATGGTAGAGGAGGACAAGCTCATAGATGTTGTTGTGTGGCAGACAGAACTGGACACTCGTTACTACATACTTTATATGGCCAGTCTCTTAGCTATGACACTGATTATTTTGTGGAGTACTTTGCATTGGATTTGCTGATGGAGAAAGGTCGTTGTGCTGGTGTTATTGCGCTGTGCTTGGAAGATGGATCATTGCACAGATTTAAAGCCAAGAACACTGTCATAGCTACTGGTGGTTATGGTCGTACCTATTTCTCCTGCACCTCAGCCCACACTTGCACTGGAGATGGCACTGCTATGGTCACCAGAGCTGGTCTTCCTAACCAAGATCTCGAGTTTGTCCAGTTTCATCCAACAGGTATCTATGGAGCTGGATGTCTAATCACAGAAGGTTGTCGTGGGGAAGGAGGTTATCTAGTGAACAGTGAAGGTGAACGGTTTATGGAGAGATATGCACCAACTGCCAAAGATCTTGCTTCAAGGGATGTCGTCTCTAGATCGATGACAATCGAAATAAGAGAAGGACTGGGTGTCGGACCAGAGAAAGACCATGTTTTCCTTCAATTGGCTCATCTGCCAGCTGACTTACTGGCCTCTCGTCTCCCTGGAATATCTGAAACAGCGATGATCTTCGCCGGTGTTGACGTGACTCGTGAACCTATACCTGTCTTACCAACTGTGCACTACAACATGGGAGGAGTACCTACAAACTTCAAGGGACAGGTGCTCGATCTTGTCGATGGTCAAGATAAAATCGTGGAAGGCCTTTGGGCTGCAGGGGAGTCAGCTTGTGCCTCAGTGCATGGTGCTAACAGACTTGGGGCTAACTCATTGTTAGATCTCGTCGTGTTCGGCCGCGCCTGCGCAAACTTTATAGCGAAAGAAAATAAACCAGGCGAAGATCTTCCTGAACTATCTGCGGATGCTGGTGAAGAAACTGTGGAAGAATTCGACAAGCTACGTTACGCCGATGGCAACACGTCTGTGGCTGAACTACGTTTGGAAATGCAGAAAGCTATGCAATCCAATGCTGCCGTATTCCGCACAGGACCAGTGTTGAAGGAAGGTTGTCAGAAGCTTGATACATGCTACGAGAAGCTACAAGATTTGAAGTTGTTTGACCGTGGAATGGTTTGGAATACGGATCTTGTCGAGGCGCTCGAATTGCAGAATTTATTGTTAAATGCTGCTCAGACTATTTATTCAGCCGAAGCCAGAGAGGAAAGTAGAGGTGCGCATGCTCGAGAAGACTTCAAGGATCGTATAGATGAATATGATTACAAGCAACCGTTAGAAGGACAAACGAAGAAACCACAAAGCGAACACTGGCGCAAACACACATTATCATACCAAGATTATAAAACTGGCAAAGTAAGGTTGGACTACCGTTCTGTTATCGACGAGACCCTCGATGATGCCGAATGTCCCTCAGTACCACCTGCTGTCCGGGTTTACTAG

Transcript

evm.model.Chr18.417

TGCCTCTCGGCCCCAGGAAGTTTTGACCAAAGTTGTACAGTTTTTGACTTTTTGTTGCTAGTTCAGTAGTCTGCAGGAGTGTTTTTAAAACACTTTTCTGTTTTAATAATAGTCATGTTGTCCTCATTGAAGACAGGTACTTGGCTTTCAAGACTTACGCTGAACTATCGTACTACCTATACGAAAGTCCTGCCGTCCGTGAGTAGAGCATTTCATTGCGGACAAAGATCAAATGCTACGACAAAGGCAGAGTTTTCGAAGGAGTACCCAGTCATTGACCATTCTTATGACTGTGTTGTGGTCGGTGCTGGTGGAGCTGGACTTCGAGCAGCATTTGGTTTGGCTAATAGTGGATTTAAAACAGCTTGTATCACAAAACTATTTCCCACAAGATCACATACCGTTGCTGCTCAGGGTGGTGTAAATGCTGCATTGGGGAACATGGAACCAGATGATTGGAAATGGCACATGTACGACACAGTGAAGGGTAGTGATTGGTTGGGTGATCAAGACGCGATTCATTACATGACAAAGGAAGCTCCTGAAGCTGTTATTGAGCTTGAAAACTATGGGATGCCATTCAGTCGAACTGATGATGGCAAAATATATCAACGAGCATTTGGTGGCCAAAGCTATGACTATGGTAGAGGAGGACAAGCTCATAGATGTTGTTGTGTGGCAGACAGAACTGGACACTCGTTACTACATACTTTATATGGCCAGTCTCTTAGCTATGACACTGATTATTTTGTGGAGTACTTTGCATTGGATTTGCTGATGGAGAAAGGTCGTTGTGCTGGTGTTATTGCGCTGTGCTTGGAAGATGGATCATTGCACAGATTTAAAGCCAAGAACACTGTCATAGCTACTGGTGGTTATGGTCGTACCTATTTCTCCTGCACCTCAGCCCACACTTGCACTGGAGATGGCACTGCTATGGTCACCAGAGCTGGTCTTCCTAACCAAGATCTCGAGTTTGTCCAGTTTCATCCAACAGGTATCTATGGAGCTGGATGTCTAATCACAGAAGGTTGTCGTGGGGAAGGAGGTTATCTAGTGAACAGTGAAGGTGAACGGTTTATGGAGAGATATGCACCAACTGCCAAAGATCTTGCTTCAAGGGATGTCGTCTCTAGATCGATGACAATCGAAATAAGAGAAGGACTGGGTGTCGGACCAGAGAAAGACCATGTTTTCCTTCAATTGGCTCATCTGCCAGCTGACTTACTGGCCTCTCGTCTCCCTGGAATATCTGAAACAGCGATGATCTTCGCCGGTGTTGACGTGACTCGTGAACCTATACCTGTCTTACCAACTGTGCACTACAACATGGGAGGAGTACCTACAAACTTCAAGGGACAGGTGCTCGATCTTGTCGATGGTCAAGATAAAATCGTGGAAGGCCTTTGGGCTGCAGGGGAGTCAGCTTGTGCCTCAGTGCATGGTGCTAACAGACTTGGGGCTAACTCATTGTTAGATCTCGTCGTGTTCGGCCGCGCCTGCGCAAACTTTATAGCGAAAGAAAATAAACCAGGCGAAGATCTTCCTGAACTATCTGCGGATGCTGGTGAAGAAACTGTGGAAGAATTCGACAAGCTACGTTACGCCGATGGCAACACGTCTGTGGCTGAACTACGTTTGGAAATGCAGAAAGCTATGCAATCCAATGCTGCCGTATTCCGCACAGGACCAGTGTTGAAGGAAGGTTGTCAGAAGCTTGATACATGCTACGAGAAGCTACAAGATTTGAAGTTGTTTGACCGTGGAATGGTTTGGAATACGGATCTTGTCGAGGCGCTCGAATTGCAGAATTTATTGTTAAATGCTGCTCAGACTATTTATTCAGCCGAAGCCAGAGAGGAAAGTAGAGGTGCGCATGCTCGAGAAGACTTCAAGGATCGTATAGATGAATATGATTACAAGCAACCGTTAGAAGGACAAACGAAGAAACCACAAAGCGAACACTGGCGCAAACACACATTATCATACCAAGATTATAAAACTGGCAAAGTAAGGTTGGACTACCGTTCTGTTATCGACGAGACCCTCGATGATGCCGAATGTCCCTCAGTACCACCTGCTGTCCGGGTTTACTAGATCCCTCTCCGCGGATAACGACGCTTCCAAATTCAAAACCATGAACTTGGTGTAAGATAGAAGCGACTGTGCTGAGTCCATAGAGTTATGTACTATAGTACATTTCCTATGGTTATTGAAAGCGCTGCAATGTAATTGGTGGCAAACTTTCGCAAAATTTCTGATGCCCGCGATTTATTACTTGCGCCCTTTGCCTGGATTATATTTTTGTCTCaaaaggctggaaaaaataaatGCTATGGTTGTTTTATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q920L2	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdha PE=1 SV=1
Q7ZVF3	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio OX=7955 GN=sdha PE=2 SV=2
Q8K2B3	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus OX=10090 GN=Sdha PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02910 all species →	Succ_DH_flav_C	Fumarate reductase flavoprotein C-term	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014006 all species →	Family	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Interproscan
IPR027477 all species →	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR015939 all species →	Domain	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR030664 all species →	Family	FAD-dependent oxidoreductase SdhA/FrdA/AprA	Interproscan
IPR011281 all species →	Family	Succinate dehydrogenase, flavoprotein subunit	Interproscan
IPR003952 all species →	Binding_site	Fumarate reductase/succinate dehydrogenase, FAD-binding site	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR037099 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11632 all species →	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000104 all species →	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0005749 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006121 all species →	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177 all species →	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00234	SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit	EC:1.3.5.1	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.