Gene detail

Detailed information of evm.model.Chr18.470 in Hemicorallium imperiale

Genomic Location: Chr18:12369882...12376939
NR annotation: XP_028411846.1, uncharacterized protein LOC114534583 [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Chr18.470

ATGTGGTGTTCTTTTATCGTTCTTCTTATTGCTGTTGCATTCCGGTTAGTCAACGGAACGACAATTCAGCAAAACTTTGGCAAAGTGAATATTAGTGAAAATGTTCCCGATGGATTTTATTGCGGACAAGTTTCTTTCCCAACGCCATTCCAAAGTGGTATCACAGTCAGAGTGTTTCCAACCTTGAGTCACGAGAATTATTCGGCAGACATTCCTAATGAAGCTTCGGTTGGCATGGTCACAGCCCTCGACCAAAACGCGTTCACTGCGTGTGTAATGGAACCAAGTCAACCGGTCGGAGCAGTTACCCTAAACTGGTTTGCCTTCAGTGACAATACTCTACCTCAAGGTACACAGACTGGAAGTGTTTCTTACAACATGTTTACAAGTGGATGTTCTTGCAGCCTTGTCAACTTTGCTCGTTCGTTCTCTAACCCACCAAAGGTTTTTCTGAGCGTTCGTCAAGTTGGAAATATTGCACGCAAGGATGCGATGTCATCATGGGCAGAAGATGTGACCGAAAATCAGTTTAGAGTTTGTCTACGAGAAATGATTAGCTTTTCTGGAACTCACGAAAATCTACATGTGGATTGGGTGGCTTTTACGAACATATTTAGTGCCAACATGACAGATCTCAGTTCAGTTGTGTTTCCTAATAGTGTTCAACCTTCTCTGGAAAATAATTACGCCTATTGCCAGATTGAAAATTTTACTCAACGTTTTCATGAGCCTCCAACAGTTATTCTTACGGCCAATTGGAGACAAAACTTGGGTTTGTCTTTAACAGATCAGAACATAGTTGCATGGGTTAAGGACGTCGACAGAACGACATTTGAAGTTTGTTTAAAAGACCTCCCAGGAATAAATGGCCAACACGAACCAATCACAGTTGATTATGCTGCTATTGGAGGTTTTCCAATGGCAAGAGGTCGCAGAAGTGTCACCCAAGTTCCTCGTTGGTCAGATTTTCGTTGTCAGTCGGTGCGTTTTGAACCTCTGACATTTTACCCCGACAAACCTGTTCACGTGCAAGTCAGCGTTAGTCACGTGAATAGTTCAAGTCAAGTGCACGACGCAGCTGTATCATGGGTGGAAGACGTCAGTGAAAATGGCTTTACATTCTGTGTGATGGAATCAGGTAGAAATGAAAGACCTCCTCATGGCTTTGCTACCGTAGAATGGATGGCATACCAAGGTGCACCGCAAGGTGGAGCTTCTGGAGTGGTATCGATTGCTGAGTGGTGGACTGGTACCAAATGTCAAACTGTGGATATCTCAGCCATTAATTTTCAATCTACCCCTACTGTTCTAGTGACTTCTGAACATCGTCGTCGCAGTATGAAACATGATGCTGCATCTCTCTGGCTTGAAGACGTTAGTTCTTCGTCATTCAAAGTGTGCTTGCGTGAGTTACAGAATTTTGATGGAGCTCATGAAGATATTTATGTGAATTGGTTAGCATTTGAAGTTCTCGAACGACCATTGTTTACTGAGCATGGTTCAACTGATTTTGTCCAACTGTCCCAGAACCCTTTGGCAAGCTCTAGCTATGCACAATGCCAGGATGTTTCTTTGTCTGTCAACTACACGTCTCCTCCTACTGTCCTTGTTTCCCCTAAACACAGTTCCTCTGGTGGAAATTTAGATCCTCAGTACAATGCCATTACAGGATGGATTGAATCTGTTACAACGTCAAGTTTCAAAATGTGTTTTAAAGAGCTTCCTACTAACAATCATTATGACGCAGTAACAGTAAGTTACGTTGTTCTGCGAGGTATCGACAGTGCTGAAGAAGACGTCTTTGTTCAACATCTTCATCGAGGAAAGTCGTCTTGGATTGGACTCAATGATCAAGCTAACGAAGGTGTCTACTTATGGACGGATGGAGGACCAGTGACGTATACACACTGGGGTCCAATAATTTCTTCTCCTCCCACCAACGAAGCTGCTGATTGCGTTGACAGTTCTGGACACATTAATGAATGTTCTCAGTCGACATACCAGTGTCACTCAAACTCCGATTGCGTCAATACAAATGGTTCATACACTTGTCAATGTCGTAATGGTTATACCGGAAATGGAAAGACTTGTACTGCTTACATATACTGTGGTGACCCAGGATCTCCCTCTCGAGGTTACACACGTGGTTCATCATTTACTTACGGATCCACAGTTACCTTTCACTGCAGCAACTCAGGAGAAGTATTAAGTGGTCCAACATCAGCAAACTGTCAAGCAGACTCTACATGGAGTAACCCAACTCTACGATGCGGAACGTATGGCGTTAGGCTGCAAGGTGGTGGTAATAGCCGTCAAGGACGAGTGGAAATCTATCATCCATCGTACGGGTGGGGCACAGTTTGTGACGATGGCTGGGACATCAATGATGGTAACGTGGTGTGTCGTCAGCTGGGCTACAGTGGAGCAAGTTCTGCGCCCCATCAGGCCCGCTATGGTCAAGGGACAGGCGCCATACTACTTGATAATCTTGGTTGCTCTGGCTCAGAATTCCATTTGTGGGATTGTTCCAGTCTAGGATGGGCAAAGCACTACTGTACCCATGTTGAAGATGCCAGTGTTGATTGTTACTGA

Transcript

evm.model.Chr18.470

GGCTTCGAAAGGTTCGCAACGTTCTTCTAAAAGATTGGGAAAAATCGAAAGATTACTGGATTATTGTAGAAGATTACGTTTTCAGCAAGTTGaagaAAGAAAGATGTGGTGTTCTTTTATCGTTCTTCTTATTGCTGTTGCATTCCGGTTAGTCAACGGAACGACAATTCAGCAAAACTTTGGCAAAGTGAATATTAGTGAAAATGTTCCCGATGGATTTTATTGCGGACAAGTTTCTTTCCCAACGCCATTCCAAAGTGGTATCACAGTCAGAGTGTTTCCAACCTTGAGTCACGAGAATTATTCGGCAGACATTCCTAATGAAGCTTCGGTTGGCATGGTCACAGCCCTCGACCAAAACGCGTTCACTGCGTGTGTAATGGAACCAAGTCAACCGGTCGGAGCAGTTACCCTAAACTGGTTTGCCTTCAGTGACAATACTCTACCTCAAGGTACACAGACTGGAAGTGTTTCTTACAACATGTTTACAAGTGGATGTTCTTGCAGCCTTGTCAACTTTGCTCGTTCGTTCTCTAACCCACCAAAGGTTTTTCTGAGCGTTCGTCAAGTTGGAAATATTGCACGCAAGGATGCGATGTCATCATGGGCAGAAGATGTGACCGAAAATCAGTTTAGAGTTTGTCTACGAGAAATGATTAGCTTTTCTGGAACTCACGAAAATCTACATGTGGATTGGGTGGCTTTTACGAACATATTTAGTGCCAACATGACAGATCTCAGTTCAGTTGTGTTTCCTAATAGTGTTCAACCTTCTCTGGAAAATAATTACGCCTATTGCCAGATTGAAAATTTTACTCAACGTTTTCATGAGCCTCCAACAGTTATTCTTACGGCCAATTGGAGACAAAACTTGGGTTTGTCTTTAACAGATCAGAACATAGTTGCATGGGTTAAGGACGTCGACAGAACGACATTTGAAGTTTGTTTAAAAGACCTCCCAGGAATAAATGGCCAACACGAACCAATCACAGTTGATTATGCTGCTATTGGAGGTTTTCCAATGGCAAGAGGTCGCAGAAGTGTCACCCAAGTTCCTCGTTGGTCAGATTTTCGTTGTCAGTCGGTGCGTTTTGAACCTCTGACATTTTACCCCGACAAACCTGTTCACGTGCAAGTCAGCGTTAGTCACGTGAATAGTTCAAGTCAAGTGCACGACGCAGCTGTATCATGGGTGGAAGACGTCAGTGAAAATGGCTTTACATTCTGTGTGATGGAATCAGGTAGAAATGAAAGACCTCCTCATGGCTTTGCTACCGTAGAATGGATGGCATACCAAGGTGCACCGCAAGGTGGAGCTTCTGGAGTGGTATCGATTGCTGAGTGGTGGACTGGTACCAAATGTCAAACTGTGGATATCTCAGCCATTAATTTTCAATCTACCCCTACTGTTCTAGTGACTTCTGAACATCGTCGTCGCAGTATGAAACATGATGCTGCATCTCTCTGGCTTGAAGACGTTAGTTCTTCGTCATTCAAAGTGTGCTTGCGTGAGTTACAGAATTTTGATGGAGCTCATGAAGATATTTATGTGAATTGGTTAGCATTTGAAGTTCTCGAACGACCATTGTTTACTGAGCATGGTTCAACTGATTTTGTCCAACTGTCCCAGAACCCTTTGGCAAGCTCTAGCTATGCACAATGCCAGGATGTTTCTTTGTCTGTCAACTACACGTCTCCTCCTACTGTCCTTGTTTCCCCTAAACACAGTTCCTCTGGTGGAAATTTAGATCCTCAGTACAATGCCATTACAGGATGGATTGAATCTGTTACAACGTCAAGTTTCAAAATGTGTTTTAAAGAGCTTCCTACTAACAATCATTATGACGCAGTAACAGTAAGTTACGTTGTTCTGCGAGGTATCGACAGTGCTGAAGAAGACGTCTTTGTTCAACATCTTCATCGAGGAAAGTCGTCTTGGATTGGACTCAATGATCAAGCTAACGAAGGTGTCTACTTATGGACGGATGGAGGACCAGTGACGTATACACACTGGGGTCCAATAATTTCTTCTCCTCCCACCAACGAAGCTGCTGATTGCGTTGACAGTTCTGGACACATTAATGAATGTTCTCAGTCGACATACCAGTGTCACTCAAACTCCGATTGCGTCAATACAAATGGTTCATACACTTGTCAATGTCGTAATGGTTATACCGGAAATGGAAAGACTTGTACTGCTTACATATACTGTGGTGACCCAGGATCTCCCTCTCGAGGTTACACACGTGGTTCATCATTTACTTACGGATCCACAGTTACCTTTCACTGCAGCAACTCAGGAGAAGTATTAAGTGGTCCAACATCAGCAAACTGTCAAGCAGACTCTACATGGAGTAACCCAACTCTACGATGCGGAACGTATGGCGTTAGGCTGCAAGGTGGTGGTAATAGCCGTCAAGGACGAGTGGAAATCTATCATCCATCGTACGGGTGGGGCACAGTTTGTGACGATGGCTGGGACATCAATGATGGTAACGTGGTGTGTCGTCAGCTGGGCTACAGTGGAGCAAGTTCTGCGCCCCATCAGGCCCGCTATGGTCAAGGGACAGGCGCCATACTACTTGATAATCTTGGTTGCTCTGGCTCAGAATTCCATTTGTGGGATTGTTCCAGTCTAGGATGGGCAAAGCACTACTGTACCCATGTTGAAGATGCCAGTGTTGATTGTTACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGM3	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Homo sapiens OX=9606 GN=DMBT1 PE=1 SV=2
Q60997	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Mus musculus OX=10090 GN=Dmbt1 PE=1 SV=2
Q8CIZ5	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Rattus norvegicus OX=10116 GN=Dmbt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR050686 all species →	Family	SRCR-S1 Scavenger Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48071 all species →	SRCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr18.470.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.