Gene detail

Detailed information of evm.model.Chr18.623 in Hemicorallium imperiale

Genomic Location: Chr18:15690759...15813347
NR annotation: CAB3989119.1, ankyrin-2 isoform X5 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Chr18.623

ATGAGCAAATCCGAGATATCTCAGGAAGAAGTTGGGCTACTCCGAGCAGCTCGTGCTGGCAACCTAGAGAAAGTTAAGAATTATCTGAATCAAAATGTTGATATAAATGTGGCAAATGCTGTAACATCAAAAGAAGGCTATGTAGAGGTTGTGAAGGAATTGGTCAGCCATGAAGCTGATATTAATTCTAAGACTAAGAAAGGCAATAGTCCACTACATATCGCATGTTTAGCTGGACAGGCAAAGGTTGCTAAAATACTGTTAACGAATGGAGCTCATGTCAACTCAAAAGCACAGAATGGTTTCACACCACTATACATGGCAGCTCAAGAAAATCATTTGGATACAGTTAAGCTTCTTCTTTTAAATGGTGCTAATCTGCAAGCTTTGACTGAGGATGGTTTTAACGCTTTGGATGTCGCTGTACAGCAGGGACATGAAGCTGTTGTTGTTGCTCTTCTTCGAAGCGAGAAAAGGAAAGGATTTCATGCTTTGCACGATGCTGCCCGCAAGGATCTCACAAAGCCAATAAAGTTCCTGCTTCAGAAAGGTCACTCAGTCAATATCCCAGCACCAAATGGCTTCACACCGTTGCACATTGCAGCCAAGTACAACAGTAGCAATGCTGCTACACTGCTTATTAACAATATGCAGTCAAACCAGTATATAACGGCCTTGTATTCTTCTTTCTTGCAGACTTATGCCATTACTCCTTTACATGCGGCGGCGAAATTTGGTCATGTGAAGATTGTCACATTGCTTCTGCAATCTGGAGCCAAGCCAGACAAACCAAACAGGGACGGATTGACATCTCTTCATTGCGCCGCCCGGGAAGGACACACTGCCATTGTGGACAGTCTAGTCAGTTACAACTCTAACATTTCAGCAAGAACGAAGAATGGTTTGACGCCGCTTCATTTAGCAGTTCAAGGCAATCATTCAAAAGCTATCACATCGTTGATTGAACATGGAGCACCACTGAATGCTGATGGCTTGTGCCCTATTCATATTGCAGCTCACTACGGAAATGTCGAGGCGACAGAAGTGCTGTTAGAAAAGGGTGTTGATACTGATTCGAGAGCTAGGAATGGATTTACTCCGCTTCATATTGCCTGCAAGAAAAACCGCGAACCAGTTATTCATCTGCTTCTGAAGTATGGAGCAAACATTAATGCTGTCAATGAGGGTGGTCAAACGCCAATGCACGTCGCAGCGTATTATGGCAACGTGTCTGTAGTTCTAATGTTGCTACAAAATGGTGGCTCGCCAGACGTGACGAACATGCGAGGGGAGACTGTTCTTCATATTGCTTGTCGGATTCGAAACATCACCATCGTTCGTTTATTGTTGAGAAATGGCGCCGCAGCAAGAGAAACTGCTCTTCATATTGCTGTGAAATCTAAGAATCTTGAAATGGTCAAACTTTTGCTGGATCATGGAGCGTCATGCGAAAATGTTGACCGGAACAAATGCACCCCACTTCATTTGGCGGCCAGAAATGGCGATGATGATATAGTACAAGTCCTATTTGAACATCAACCTCCTCTTTTGGAACTCAATCAAAAAGGTTTCACTCCTCTTCACGAAGCTTCTCGCTATGGTCACGTGAAGACTGTTGAACTTTTGTTACATCATTATCCGTCACCAGACCCCACTGGAAAGCACGGGATGACGCCACTACACGTTGCATCACATTATGATCACGTGAAAGTTGCTCTACTACTGATTAATAAAGATGCTTCTAAATACGCGGCGACGAAGACCGATGTGGCTGCCATTTTGCTCGAACATGGAGTCGATCCTGATAAGAAAACAAAGACAGGCGTAAGCCCTCTGCATTTGGCAGCTAAGGAAGGTCACGTGGAAGCGGCTTCCATGCTTTTAGAACATGGTGCTAATCCTAGCATTCGAACTAATAATGGTCTCACTCCACTTCACGTGTGCGCGAGGTACAATCAAGTTGAGGTTGCCAGAGTTTTGTTGAAGTACAGAGCGGAAATCAATGCTCAAACTACGAGTGGCTTTAGTCCTCTTCACATCGCCTGTCACTGTGGCCACTACGAGATTGCTAAACTGCTGTTGGAAAACGAGGCCAATGTTGAAATCACGACGACACAAGGATATATGCCACTGCATTTCGCAGCTCAACAGGGATACTTGAAACTCATTGAACTTTTGCTGACCTACAGTGCGCCTCCAGATGCTCTTACTAAGGAAGGCTTTACTGCGCTCTATATTGCCCAGTATCTGAGTCAAACTATTACGACGATAGAATGGAAACACATTCTTGAAATTCTTCACAGAGTCACAACAGCTCCAGTATCCATCACTGTTTTGGAAAGAAACAAGAATGCCCCACAACCTGTTCAAGCAATTGAACTTCCTGAAGAGCTGGAGGATGATAATAGCGAGGGAACGGTGGCGTTAGAAGAGGAAGATATCGAAGAAGAAACTCCATCTCATGTAAGCGACGACGAATACCTTCAGTCTTTCATGACGAACGAAGGTTCGAGCATCCGTGCCAATGGCCTTCATCCGCCTCATATCGACCAGTCGGCTCGGAGTACGCCGGACTCGATGTATCACGACGTGTTCCGAGATATATCTTCGCCCATGAGTCCTTTCAAGTCCGAAGAGGATAGACCACCGTCACAGTATTTCGAGGACGATATTGTAGTCGTAAACGAGTCGTTTGTGGAGTCCACTCCGAGCTTTAGGTTTGAGGAATCCGATCTGGACAAGTTACCTACGGATAATATATCCCGGGGGCCGCCAGTCTCTGGAGGATTCTTGATTAGCTTCATGGTGGATGCTCGTGGTTGTACGATGCGAAGTAGTGAAACTGGGATTAAAATGTCCGTGCCTGCACAAAGTTGCCGTATGCCAACAAGAATAACTTGTCGATTACTCAAATCACTGAAGCCATCATTGATGCCATCGCGGGACGAGGGAGAGGCGATTGCGTGTCGTATAATTGACCTAGCTCCTGGTGGCGTAAAGTTCCTCAAGCCTGTGACCTTAGAAGTTCCGCACTTTGCTTCCTTGCGTAATGGAGAGCGAGAGTTAGTGATCTTGAGTACTTACGATGGTGGAATCAACTGGAAAGAAATGGCGGTTGAAAACGAATCAGTAACAAAGGGAGAACAAATCAAGTCCCATGTTATTCCTCAGTGTACCGTCAATATCCCCGAAGGTGCTGTTAAACCTGGTACTATACTGGATTTGCAGGTCCTACCTGTTGACGAACAGCTCAACAACGACCAAGAAGGAGCGACCATTAGTACTATCGTTAAGATTGGTCCTTCAGATACCATCTTTTCAAGACCTGTCACTGTGTCTTTTCCAACTCCGACTTACACCCGTAGACATGACTACGAGGTTTCTCCCAGTCAGCGGCTATTAGCCTCTACCCTAGGAGCTCCGGGATCTGACTGGAATGACGTCACCACATCGACCCCGTTGAAAGTTATCAATGGATGTGCTACATTTACTACTGAAGAACCAGGCAGATATTGCCTTGTTGACACCTACAACGACACAGACGTAACTAAAGATGCAAGATTAATGTATAAGAAGCTGACCTGTGTTCCTTACATGGCGAAATTTGTTGTGTTTGCAAAGCTCTCCGTTAACGGAAAATATGCTAAACTTCGAGTGTTTTGTATGACCGATGACACGGTGGACAAAACTTTAGAAACCCAAACAGGATTCACCGAGGTGGCATGTAGTCGCAATGTCGAGATCTCAGATGGTCAAGCTATTTTCCTTCATTGCACTGGCAACATGGCGGCCAACGTCGACGGTGCATTGCAGCTGAACTTCTTCGCGTTTCGCGAGAACCGTTTACCGTTCACTGTGCACGTGGTCAATCCAAACGAGCCAATGAAAATGAAGCTCGCTGTGATTCTCAATCCGCGACGAAATCAACATGGGCGAGTGCATGCTGCGTGCGCACTCGATATTAATTTATCCTCTGACGTAAGTCATTTGCATACGGAAATTCCCGACAAGGTACTAAAATTGATCGCCAAGGAATTTGGCGATCATGATTGGATTGCGTTTGGACAGCAAACTGGATTGGGTGACTCGAAACTACAAGATATCTTAGATTTAAACAACCGCAACACTGAAGCCTCGTCCATGGAAGTCCTTCAGATCTGGAAAGACGAACAAGGACCAGAAGCGACCATGGAAAACTTGGAATCTCACCTCAAAAACATCGGTCGTGAAGATATCTTAAATAATTTCAAGTATCTGGCATACTCAAGTTACGGTACAAAAGATCGCATGATGGTTACAGAAATTCGACGATCCGGAGACGCGGGTCCTATTTTTAACGGCGTAATAAACGGTGACAGCATTCATCTCGATGATTCGTCTGTCGAAACGTCCGTTCAGGAAAAGCGCTACTCGGGTTATTACGACGACTCGACGGAGCATTCCGAAGAGCGACCGGAAGTCAACGGCAGTACGGAAGAAAAACGAGAAGGCGTGATTCAAGGCATGTTTTCGGATAACGAAGAGATTTTGAAGTTTTTCCACGATGGCGGTTCCAAAAACGCCGACGAAACCGAAATTGACTAA

Transcript

evm.model.Chr18.623

ATGAGCAAATCCGAGATATCTCAGGAAGAAGTTGGGCTACTCCGAGCAGCTCGTGCTGGCAACCTAGAGAAAGTTAAGAATTATCTGAATCAAAATGTTGATATAAATGTGGCAAATGCTGTAACATCAAAAGAAGGCTATGTAGAGGTTGTGAAGGAATTGGTCAGCCATGAAGCTGATATTAATTCTAAGACTAAGAAAGGCAATAGTCCACTACATATCGCATGTTTAGCTGGACAGGCAAAGGTTGCTAAAATACTGTTAACGAATGGAGCTCATGTCAACTCAAAAGCACAGaATGGTTTCACACCACTATACATGGCAGCTCAAGAAAATCATTTGGATACAGTTAAGCTTCTTCTTTTAAATGGTGCTAATCTGCAAGCTTTGACTGAGGATGGTTTTAACGCTTTGGATGTCGCTGTACAGCAGGGACATgaagctgttgttgttgctcttctTCGAAGCGAGAAAAGGAAAGGATTTCATGCTTTGCACGATGCTGCCCGCAAGGATCTCACAAAGCCAATAAAGTTCCTGCTTCAGAAAGGTCACTCAGTCAATATCCCAGCACCAAATGGCTTCACACCGTTGCACATTGCAGCCAAGTACAACAGTAGCAATGCTGCTACACTGCTTATTAACAATATGCAGTCAAACCAGTATATAACGGCCTTGTATTCTTCTTTCTTGCAGACTTATGCCATTACTCCTTTACATGCGGCGGCGAAATTTGGTCATGTGAAGATTGTCACATTGCTTCTGCAATCTGGAGCCAAGCCAGACAAACCAAACAGGGACGGATTGACATCTCTTCATTGCGCCGCCCGGGAAGGACACACTGCCATTGTGGACAGTCTAGTCAGTTACAACTCTAACATTTCAGCAAGAACGAAGaatggtTTGACGCCGCTTCATTTAGCAGTTCAAGGCAATCATTCAAAAGCTATCACATCGTTGATTGAACATGGAGCACCACTGAATGCTGATGGCTTGTGCCCTATTCATATTGCAGCTCACTACGGAAATGTCGAGGCGACAGAAGTGCTGTTAGAAAAGGGTGTTGATACTGATTCGAGAGCTAGGAATGGATTTACTCCGCTTCATATTGCCTGCAAGAAAAACCGCGAACCAGTTATTCATCTGCTTCTGAAGTATGGAGCAAACATTAATGCTGTCAATGAGGGTGGTCAAACGCCAATGCACGTCGCAGCGTATTATGGCAACGTGTCTGTAGTTCTAATGTTGCTACAAAATGGTGGCTCGCCAGACGTGACGAACATGCGAGGGGAGACTGTTCTTCATATTGCTTGTCGGATTCGAAACATCACCATCGTTCGTTTATTGTTGAGAAATGGCGCCGCAGCAAGAGAAACTGCTCTTCATATTGCTGTGAAATCTAAGAATCTTGAAATGGTCAAACTTTTGCTGGATCATGGAGCGTCATGCGAAAATGTTGACCGGAACAAATGCACCCCACTTCATTTGGCGGCCAGAAATGGCGATGATGATATAGTACAAGTCCTATTTGAACATCAACCTCCTCTTTTGGAACTCAATCAAAAAGGTTTCACTCCTCTTCACGAAGCTTCTCGCTATGGTCACGTGAAGACTGTTGAACTTTTGTTACATCATTATCCGTCACCAGACCCCACTGGAAAGCACGGGATGACGCCACTACACGTTGCATCACATTATGATCACGTGAAAGTTGCTCTACTACTGATTAATAAAGATGCTTCTAAATACGCGGCGACGAAGACCGATGTGGCTGCCATTTTGCTCGAACATGGAGTCGATCCTGATAAGAAAACAAAGACAGGCGTAAGCCCTCTGCATTTGGCAGCTAAGGAAGGTCACGTGGAAGCGGCTTCCATGCTTTTAGAACATGGTGCTAATCCTAGCATTCGAACTAATAATGGTCTCACTCCACTTCACGTGTGCGCGAGGTACAATCAAGTTGAGGTTGCCAGAGTTTTGTTGAAGTACAGAGCGGAAATCAATGCTCAAACTACGAGTGGCTTTAGTCCTCTTCACATCGCCTGTCACTGTGGCCACTACGAGATTGCTAAACTGCTGTTGGAAAACGAGGCCAATGTTGAAATCACGACGACACAAGGATATATGCCACTGCATTTCGCAGCTCAACAGGGATACTTGAAACTCATTGAACTTTTGCTGACCTACAGTGCGCCTCCAGATGCTCTTACTAAGGAAGGCTTTACTGCGCTCTATATTGCCCAGTATCTGAGTCAAACTATTACGACGATAGAATGGAAACACATTCTTGAAATTCTTCACAGAGTCACAACAGCTCCAGTATCCATCACTGTTTTGGAAAGAAACAAGAATGCCCCACAACCTGTTCAAGCAATTGAACTTCCTGAAGAGCTGGAGGATGATAATAGCGAGGGAACGGTGGCGTTAGAAGAGGAAGATATCGAAGAAGAAACTCCATCTCATGTAAGCGACGACGAATACCTTCAGTCTTTCATGACGAACGAAGGTTCGAGCATCCGTGCCAATGGCCTTCATCCGCCTCATATCGACCAGTCGGCTCGGAGTACGCCGGACTCGATGTATCACGACGTGTTCCGAGATATATCTTCGCCCATGAGTCCTTTCAAGTCCGAAGAGGATAGACCACCGTCACAGTATTTCGAGGACGATATTGTAGTCGTAAACGAGTCGTTTGTGGAGTCCACTCCGAGCTTTAGGTTTGAGGAATCCGATCTGGACAAGTTACCTACGGATAATATATCCCGGGGGCCGCCAGTCTCTGGAGGATTCTTGATTAGCTTCATGGTGGATGCTCGTGGTTGTACGATGCGAAGTAGTGAAACTGGGATTAAAATGTCCGTGCCTGCACAAAGTTGCCGTATGCCAACAAGAATAACTTGTCGATTACTCAAATCACTGAAGCCATCATTGATGCCATCGCGGGACGAGGGAGAGGCGATTGCGTGTCGTATAATTGACCTAGCTCCTGGTGGCGTAAAGTTCCTCAAGCCTGTGACCTTAGAAGTTCCGCACTTTGCTTCCTTGCGTAATGGAGAGCGAGAGTTAGTGATCTTGAGTACTTACGATGGTGGAATCAACTGGAAAGAAATGGCGGTTGAAAACGAATCAGTAACAAAGGGAGAACAAATCAAGTCCCATGTTATTCCTCAGTGTACCGTCAATATCCCCGAAGGTGCTGTTAAACCTGGTACTATACTGGATTTGCAGGTCCTACCTGTTGACGAACAGCTCAACAACGACCAAGAAGGAGCGACCATTAGTACTATCGTTAAGATTGGTCCTTCAGATACCATCTTTTCAAGACCTGTCACTGTGTCTTTTCCAACTCCGACTTACACCCGTAGACATGACTACGAGGTTTCTCCCAGTCAGCGGCTATTAGCCTCTACCCTAGGAGCTCCGGGATCTGACTGGAATGACGTCACCACATCGACCCCGTTGAAAGTTATCAATGGATGTGCTACATTTACTACTGAAGAACCAGGCAGATATTGCCTTGTTGACACCTACAACGACACAGACGTAACTAAAGATGCAAGATTAATGTATAAGAAGCTGACCTGTGTTCCTTACATGGCGAAATTTGTTGTGTTTGCAAAGCTCTCCGTTAACGGAAAATATGCTAAACTTCGAGTGTTTTGTATGACCGATGACACGGTGGACAAAACTTTAGAAACCCAAACAGGATTCACCGAGGTGGCATGTAGTCGCAATGTCGAGATCTCAGATGGTCAAGCTATTTTCCTTCATTGCACTGGCAACATGGCGGCCAACGTCGACGGTGCATTGCAGCTGAACTTCTTCGCGTTTCGCGAGAACCGTTTACCGTTCACTGTGCACGTGGTCAATCCAAACGAGCCAATGAAAATGAAGCTCGCTGTGATTCTCAATCCGCGACGAAATCAACATGGGCGAGTGCATGCTGCGTGCGCACTCGATATTAATTTATCCTCTGACGTAAGTCATTTGCATACGGAAATTCCCGACAAGGTACTAAAATTGATCGCCAAGGAATTTGGCGATCATGATTGGATTGCGTTTGGACAGCAAACTGGATTGGGTGACTCGAAACTACAAGATATCTTAGATTTAAACAACCGCAACACTGAAGCCTCGTCCATGGAAGTCCTTCAGATCTGGAAAGACGAACAAGGACCAGAAGCGACCATGGAAAACTTGGAATCTCACCTCAAAAACATCGGTCGTGAAGATATCTTAAATAATTTCAAGTATCTGGCATACTCAAGTTACGGTACAAAAGATCGCATGATGGTTACAGAAATTCGACGATCCGGAGACGCGGGTCCTATTTTTAACGGCGTAATAAACGGTGACAGCATTCATCTCGATGATTCGTCTGTCGAAACGTCCGTTCAGGAAAAGCGCTACTCGGGTTATTACGACGACTCGACGGAGCATTCCGAAGAGCGACCGGAAGTCAACGGCAGTACGGAAGAAAAACGAGAAGGCGTGATTCAAGGCATGTTTTCGGATAACGAAGagattttgaagtttttccaCGATGGCGGTTCCAAAAACGCCGACGAAACCGAAATTGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12955	Ankyrin-3 OS=Homo sapiens OX=9606 GN=ANK3 PE=1 SV=3
G5E8K5	Ankyrin-3 OS=Mus musculus OX=10090 GN=Ank3 PE=1 SV=1
O70511	Ankyrin-3 OS=Rattus norvegicus OX=10116 GN=Ank3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002932 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF13606 all species →	Ank_3	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF17809 all species →	UPA_2	UPA domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR051165 all species →	Family	Multifunctional Ankyrin Repeat Domain-Containing Protein	Interproscan
IPR040745 all species →	Domain	Ankyrin, UPA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24123 all species →	ANKYRIN REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr18.623.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.