Detailed information of evm.model.Chr18.732 in Hemicorallium imperiale

Genomic Location: Chr18:18314976...18323113
NR annotation: XP_028400643.1, uncharacterized protein LOC114523808 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A0R4IB93Ubiquitin carboxyl-terminal hydrolase 48 OS=Danio rerio OX=7955 GN=usp48 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000545 (this species only)
Ubiquitin familyDUB|ULP|ULP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21056
all species →		ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF21599
all species →		ZSWIM3_NZinc finger SWIM domain-containing protein 3, N-terminalDomainInterproscan
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF02902
all species →		Peptidase_C48Ulp1 protease family, C-terminal catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048324
all species →		DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR052579
all species →		FamilyZinc finger SWIM domain-containing proteinInterproscan
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR048325
all species →		DomainZSWIM3, N-terminal domainInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR003653
all species →		DomainUlp1 protease family, C-terminal catalytic domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR018200
all species →		Conserved_siteUbiquitin specific protease, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31569
all species →		SWIM-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0006508
all species →		Biological ProcessproteolysisInterproscan
GO:0008234
all species →		Molecular Functioncysteine-type peptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr18.732.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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