Gene detail

Detailed information of evm.model.Chr18.90 in Hemicorallium imperiale

Genomic Location: Chr18:2500883...2508955
NR annotation: XP_028405124.1, S-phase kinase-associated protein 1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZCF3	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1
P63209	S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2
Q5ZKF5	S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004214 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SKP1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01466 all species →	Skp1	Skp1 family, dimerisation domain	Domain	Interproscan
PF03931 all species →	Skp1_POZ	Skp1 family, tetramerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036296 all species →	Homologous_superfamily	SKP1-like, dimerisation domain superfamily	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR016897 all species →	Family	S-phase kinase-associated protein 1	Interproscan
IPR001232 all species →	Family	S-phase kinase-associated protein 1-like	Interproscan
IPR016072 all species →	Domain	SKP1 component, dimerisation	Interproscan
IPR016073 all species →	Domain	SKP1 component, POZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11165 all species →	SKP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03094	SKP1, CBF3D; S-phase kinase-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.