Detailed information of evm.model.Chr19.113 in Hemicorallium imperiale

Genomic Location: Chr19:2228029...2283358
NR annotation: XP_046864595.1, WD repeat-containing protein 48-like [Xenia sp. Carnegie-2017]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr19.113 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PFM9WD repeat-containing protein 48 OS=Danio rerio OX=7955 GN=wdr48 PE=2 SV=2
Q05B17WD repeat-containing protein 48 OS=Xenopus tropicalis OX=8364 GN=wdr48 PE=2 SV=1
Q5RAW8WD repeat-containing protein 48 OS=Pongo abelii OX=9601 GN=WDR48 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004683 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyULD|UBL|SUMO · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF11816
all species →		DUF3337Domain of unknown function (DUF3337)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051246
all species →		FamilyWD repeat-containing protein 48Interproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR021772
all species →		FamilyWDR48/Bun107Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19862
all species →		WD REPEAT-CONTAINING PROTEIN 48Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15361WDR48, UAF1; WD repeat-containing protein 48-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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