Gene detail

Detailed information of evm.model.Chr19.227 in Hemicorallium imperiale

Genomic Location: Chr19:4845932...4857228
NR annotation: XP_028406068.1, nucleoporin-like protein 2 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr19.227 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CIC2	Nucleoporin NUP42 OS=Mus musculus OX=10090 GN=Nup42 PE=2 SV=1
O15504	Nucleoporin NUP42 OS=Homo sapiens OX=9606 GN=NUP42 PE=1 SV=1
Q5RB98	Nucleoporin NUP42 OS=Pongo abelii OX=9601 GN=NUP42 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006618 (this species only)
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051767 all species →	Family	Nucleoporin NUP42 domain-containing protein	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46527 all species →	NUCLEOPORIN-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14321	NUPL2, NUP42, CG1; nucleoporin-like protein 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.