Detailed information of evm.model.Chr19.259 in Hemicorallium imperiale

Genomic Location: Chr19:5706667...5776567
NR annotation: CAB3981060.1, WD repeat and FYVE domain-containing 3 isoform X3 [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr19.259 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6VNB8WD repeat and FYVE domain-containing protein 3 OS=Mus musculus OX=10090 GN=Wdfy3 PE=1 SV=1
Q8IZQ1WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens OX=9606 GN=WDFY3 PE=1 SV=2
Q6ZS81WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens OX=9606 GN=WDFY4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002444 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20426
all species →		NBCH_WD40Neurobeachin beta propeller domainRepeatInterproscan
PF14844
all species →		PH_BEACHPH domain associated with Beige/BEACHDomainInterproscan
PF01363
all species →		FYVEFYVE zinc fingerDomainInterproscan
PF15787
all species →		DUF4704Neurobeachin/BDCP, DUF4704 alpha solenoid regionRepeatInterproscan
PF02138
all species →		BeachBeige/BEACH domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR000409
all species →		DomainBEACH domainInterproscan
IPR000306
all species →		DomainFYVE zinc fingerInterproscan
IPR023362
all species →		DomainPH-BEACH domainInterproscan
IPR017455
all species →		DomainZinc finger, FYVE-relatedInterproscan
IPR046851
all species →		DomainNeurobeachin, beta-propeller domainInterproscan
IPR036372
all species →		Homologous_superfamilyBEACH domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR051944
all species →		FamilyBEACH domain-containing proteinInterproscan
IPR031570
all species →		DomainNeurobeachin/BDCP, DUF4704Interproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46108
all species →		BLUE CHEESEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22262WDFY3, ALFY; WD repeat and FYVE domain-containing protein 3-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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