Gene detail

Detailed information of evm.model.Chr20.136 in Hemicorallium imperiale

Genomic Location: Chr20:3809717...3851429
NR annotation: XP_035694044.1, malignant fibrous histiocytoma-amplified sequence 1 homolog [Branchiostoma floridae]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr20.136 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54FK7	Ras-related protein RabL OS=Dictyostelium discoideum OX=44689 GN=rabL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001343 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052595 all species →	Family	Leucine-rich repeat-containing protein 69/Receptor-like	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48057 all species →	LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr20.136.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.