Gene detail

Detailed information of evm.model.Chr20.344 in Hemicorallium imperiale

Genomic Location: Chr20:9238451...9247988
NR annotation: XP_028399548.1, cytoplasmic polyadenylation element-binding protein 1-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr20.344 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R733	Cytoplasmic polyadenylation element-binding protein 1 OS=Pongo abelii OX=9601 GN=CPEB1 PE=2 SV=1
Q52KN7	Cytoplasmic polyadenylation element-binding protein 1-B OS=Xenopus laevis OX=8355 GN=cpeb1-b PE=2 SV=1
Q91572	Cytoplasmic polyadenylation element-binding protein 1-A OS=Xenopus laevis OX=8355 GN=cpeb1-a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16366 all species →	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan
PF16368 all species →	CEBP1_N	Cytoplasmic polyadenylation element-binding protein 1 N-terminus	Family	Interproscan
PF16367 all species →	RRM_7	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR038446 all species →	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR034819 all species →	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032296 all species →	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan
IPR032292 all species →	Domain	Cytoplasmic polyadenylation element-binding protein 1, N-terminal	Interproscan
IPR034977 all species →	Domain	CPEB-1, RNA recognition motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12566 all species →	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000900 all species →	Molecular Function	mRNA regulatory element binding translation repressor activity	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0008135 all species →	Molecular Function	translation factor activity, RNA binding	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1990124 all species →	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan
GO:2000766 all species →	Biological Process	negative regulation of cytoplasmic translation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02602	CPEB, ORB; cytoplasmic polyadenylation element-binding protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.