Detailed information of evm.model.Chr20.397 in Hemicorallium imperiale

Genomic Location: Chr20:11236498...11245734
NR annotation: XP_027053593.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like [Pocillopora damicornis]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr20.397 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9DC33High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
Q9NP66High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1
Q5ZKF4High mobility group protein 20A OS=Gallus gallus OX=9031 GN=HMG20A PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002175 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR051965
all species →		FamilyChromatin Regulation and Neuronal Gene ExpressionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46040
all species →		HIGH MOBILITY GROUP PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr20.397.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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