Gene detail

Detailed information of evm.model.Chr21.254 in Hemicorallium imperiale

Genomic Location: Chr21:5125957...5151961
NR annotation: XP_028399807.1, uncharacterized protein LOC114523148 isoform X1 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr21.254 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T0V4	Small ribosomal subunit protein uS17 OS=Bos taurus OX=9913 GN=RPS11 PE=2 SV=3
P62280	Small ribosomal subunit protein uS17 OS=Homo sapiens OX=9606 GN=RPS11 PE=1 SV=3
P61270	Small ribosomal subunit protein uS17 OS=Macaca fascicularis OX=9541 GN=RPS11 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007116 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF16205 all species →	Ribosomal_S17_N	Ribosomal_S17 N-terminal	Family	Interproscan
PF00366 all species →	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000266 all species →	Family	Small ribosomal subunit protein uS17	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR032440 all species →	Domain	Small ribosomal subunit protein uS17, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10744 all species →	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06820	PLXNA; plexin A	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.