Gene detail

Detailed information of evm.model.Chr21.259 in Hemicorallium imperiale

Genomic Location: Chr21:5218046...5225080
NR annotation: CAB4024967.1, nucleoporin NUP53-like, partial [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr21.259 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P6X9	Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1
Q66IJ0	Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1
Q68FY1	Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002332 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05172 all species →	Nup35_RRM	Nup53/35/40-type RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017389 all species →	Family	Nucleoporin, NUP53	Interproscan
IPR007846 all species →	Domain	RNA-recognition motif (RRM) Nup35-type domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21527 all species →	NUCLEOPORIN NUP35	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0006999 all species →	Biological Process	nuclear pore organization	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031965 all species →	Cellular Component	nuclear membrane	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan
GO:0044615 all species →	Cellular Component	nuclear pore nuclear basket	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14313	NUP35, NUP53; nuclear pore complex protein Nup53	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.