Detailed information of evm.model.Chr21.47 in Hemicorallium imperiale

Genomic Location: Chr21:1720092...1744578
NR annotation: XP_046853624.1, uncharacterized protein LOC124446788 [Xenia sp. Carnegie-2017]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr21.47 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P57756Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
O70165Ficolin-1 OS=Mus musculus OX=10090 GN=Fcn1 PE=1 SV=1
Q9WTS8Ficolin-1 OS=Rattus norvegicus OX=10116 GN=Fcn1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011809 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04488
all species →		Gly_transf_sugGlycosyltransferase sugar-binding region containing DXD motif FamilyInterproscan
PF00147
all species →		Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF03151
all species →		TPTTriose-phosphate Transporter familyFamilyInterproscan
PF04230
all species →		PS_pyruv_transPolysaccharide pyruvyl transferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007577
all species →		Conserved_siteGlycosyltransferase, DXD sugar-binding motifInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR014716
all species →		Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181
all species →		DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR029044
all species →		Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR004853
all species →		DomainSugar phosphate transporter domainInterproscan
IPR020837
all species →		Conserved_siteFibrinogen, conserved siteInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR007345
all species →		DomainPolysaccharide pyruvyl transferaseInterproscan
IPR050373
all species →		FamilyFibrinogen C-terminal domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143
all species →		FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr21.47.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP