Genomic Location: Chr21:2176620...2197359
NR annotation: CAH3186488.1, unnamed protein product [Porites lobata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr21.73 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P19838 | Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 PE=1 SV=2 |
| Q04861 | Nuclear factor NF-kappa-B p105 subunit OS=Gallus gallus OX=9031 GN=NFKB1 PE=2 SV=2 |
| P25799 | Nuclear factor NF-kappa-B p105 subunit OS=Mus musculus OX=10090 GN=Nfkb1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000740 (this species only) |
| Transcription factor family | RHD · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00023 all species → | Ank | Ankyrin repeat | Repeat | Interproscan |
| PF13637 all species → | Ank_4 | Ankyrin repeats (many copies) | Repeat | Interproscan |
| PF12796 all species → | Ank_2 | Ankyrin repeats (3 copies) | Repeat | Interproscan |
| PF00554 all species → | RHD_DNA_bind | Rel homology DNA-binding domain | Domain | Interproscan |
| PF16179 all species → | RHD_dimer | Rel homology dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014756 all species → | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR002909 all species → | Domain | IPT domain | Interproscan |
| IPR011029 all species → | Homologous_superfamily | Death-like domain superfamily | Interproscan |
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR002110 all species → | Repeat | Ankyrin repeat | Interproscan |
| IPR000451 all species → | Family | NF-kappa-B/Dorsal | Interproscan |
| IPR008967 all species → | Homologous_superfamily | p53-like transcription factor, DNA-binding domain superfamily | Interproscan |
| IPR011539 all species → | Domain | Rel homology domain, DNA-binding domain | Interproscan |
| IPR030492 all species → | Conserved_site | Rel homology domain, conserved site | Interproscan |
| IPR037059 all species → | Homologous_superfamily | Rel homology domain (RHD), DNA-binding domain superfamily | Interproscan |
| IPR032397 all species → | Domain | Rel homology dimerisation domain | Interproscan |
| IPR033926 all species → | Domain | NFkappaB IPT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24169 all species → | NUCLEAR FACTOR NF-KAPPA-B PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
evm.model.Chr21.73.
