Gene detail

Detailed information of evm.model.Contig123.199 in Hemicorallium imperiale

Genomic Location: Contig123:755703...756344
NR annotation: WP_011264710.1, peptide chain release factor 1 [Mesomycoplasma mobile]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig123.199 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6KIA0	Peptide chain release factor 1 OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) OX=267748 GN=prfA PE=3 SV=1
A5IZH6	Peptide chain release factor 1 OS=Mycoplasmopsis agalactiae (strain NCTC 10123 / CIP 59.7 / PG2) OX=347257 GN=prfA PE=3 SV=1
Q4A6L9	Peptide chain release factor 1 OS=Mycoplasmopsis synoviae (strain 53) OX=262723 GN=prfA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03462 all species →	PCRF	PCRF domain	Domain	Interproscan
PF00472 all species →	RF-1	RF-1 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005139 all species →	Domain	Peptide chain release factor	Interproscan
IPR045853 all species →	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR000352 all species →	Domain	Peptide chain release factor class I	Interproscan
IPR050057 all species →	Family	Prokaryotic/Mitochondrial Release Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43804 all species →	LD18447P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02835	prfA, MTRF1, MRF1; peptide chain release factor 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.