Detailed information of evm.model.Contig123.218 in Hemicorallium imperiale

Genomic Location: Contig123:842092...843381
NR annotation: MCK5806953.1, lysine--tRNA ligase [Mycoplasmataceae bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig123.218 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q98QG4Lysine--tRNA ligase 2 OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=lysS2 PE=3 SV=1
Q6KIP6Lysine--tRNA ligase OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) OX=267748 GN=lysS PE=3 SV=1
Q49158Lysine--tRNA ligase OS=Mycoplasmopsis fermentans (strain ATCC 19989 / NBRC 14854 / NCTC 10117 / PG18) OX=496833 GN=lysS PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003612 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00152
all species →		tRNA-synt_2tRNA synthetases class II (D, K and N) DomainInterproscan
PF01336
all species →		tRNA_anti-codonOB-fold nucleic acid binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004364
all species →		DomainAminoacyl-tRNA synthetase, class II (D/K/N)Interproscan
IPR004365
all species →		DomainOB-fold nucleic acid binding domain, AA-tRNA synthetase-typeInterproscan
IPR018149
all species →		DomainLysyl-tRNA synthetase, class II, C-terminalInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR044136
all species →		DomainLysine-tRNA ligase, class II, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42918
all species →		LYSYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0004824
all species →		Molecular Functionlysine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006430
all species →		Biological Processlysyl-tRNA aminoacylationInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig123.218.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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