Detailed information of evm.model.Contig123.282 in Hemicorallium imperiale

Genomic Location: Contig123:1232591...1233349
NR annotation: SYV89769.1, DNA-directed RNA polymerase subunit beta', partial [Metamycoplasma alkalescens]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig123.282 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5IZ52DNA-directed RNA polymerase subunit beta' OS=Mycoplasmopsis agalactiae (strain NCTC 10123 / CIP 59.7 / PG2) OX=347257 GN=rpoC PE=3 SV=1
Q4A5S8DNA-directed RNA polymerase subunit beta' OS=Mycoplasmopsis synoviae (strain 53) OX=262723 GN=rpoC PE=3 SV=1
Q5ZZS2DNA-directed RNA polymerase subunit beta' OS=Mesomycoplasma hyopneumoniae (strain 232) OX=295358 GN=rpoC PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010783 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05000
all species →		RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF04998
all species →		RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038120
all species →		Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007083
all species →		DomainRNA polymerase Rpb1, domain 4Interproscan
IPR045867
all species →		FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR007081
all species →		DomainRNA polymerase Rpb1, domain 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376
all species →		DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003899
all species →		Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig123.282.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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