Detailed information of evm.model.Contig123.283 in Hemicorallium imperiale

Genomic Location: Contig123:1233428...1234908
NR annotation: MCK5806810.1, DNA-directed RNA polymerase subunit beta' [Mycoplasmataceae bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig123.283 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6KI08DNA-directed RNA polymerase subunit beta' OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) OX=267748 GN=rpoC PE=3 SV=1
Q98Q24DNA-directed RNA polymerase subunit beta' OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=rpoC PE=3 SV=1
B3PM77DNA-directed RNA polymerase subunit beta' OS=Metamycoplasma arthritidis (strain 158L3-1) OX=243272 GN=rpoC PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010783 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04983
all species →		RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF00623
all species →		RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045867
all species →		FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR007066
all species →		DomainRNA polymerase Rpb1, domain 3Interproscan
IPR006592
all species →		DomainRNA polymerase, N-terminalInterproscan
IPR000722
all species →		DomainRNA polymerase, alpha subunitInterproscan
IPR042102
all species →		Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376
all species →		DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003899
all species →		Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig123.283.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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