Detailed information of evm.model.Contig123.304 in Hemicorallium imperiale

Genomic Location: Contig123:1319534...1322382
NR annotation: NQZ66010.1, type I DNA topoisomerase [Mycoplasmatales bacterium]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig123.304 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99UM1DNA topoisomerase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=topA PE=3 SV=1
Q7A5Y5DNA topoisomerase 1 OS=Staphylococcus aureus (strain N315) OX=158879 GN=topA PE=1 SV=1
Q6GHI5DNA topoisomerase 1 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=topA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012429 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01131
all species →		Topoisom_bacDNA topoisomeraseFamilyInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF02481
all species →		DNA_processg_ADNA recombination-mediator protein AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013497
all species →		DomainDNA topoisomerase, type IA, centralInterproscan
IPR023406
all species →		Active_siteDNA topoisomerase, type IA, active siteInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR013824
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 1Interproscan
IPR013826
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 3Interproscan
IPR023405
all species →		Homologous_superfamilyDNA topoisomerase, type IA, core domainInterproscan
IPR013825
all species →		Homologous_superfamilyDNA topoisomerase, type IA, central region, subdomain 2Interproscan
IPR003602
all species →		DomainDNA topoisomerase, type IA, DNA-binding domainInterproscan
IPR003601
all species →		DomainDNA topoisomerase, type IA, domain 2Interproscan
IPR003488
all species →		FamilyDNA recombination-mediator protein AInterproscan
IPR000380
all species →		FamilyDNA topoisomerase, type IAInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42785
all species →		DNA TOPOISOMERASE, TYPE IA, COREInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003916
all species →		Molecular FunctionDNA topoisomerase activityInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan
GO:0003917
all species →		Molecular FunctionDNA topoisomerase type I (single strand cut, ATP-independent) activityInterproscan
GO:0009294
all species →		Biological ProcessDNA-mediated transformationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig123.304.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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