Gene detail

Detailed information of evm.model.Contig123.38 in Hemicorallium imperiale

Genomic Location: Contig123:145038...146371
NR annotation: MCK5867083.1, 50S ribosomal protein L11 [Mycoplasmataceae bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig123.38 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6KIF0	Large ribosomal subunit protein uL11 OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) OX=267748 GN=rplK PE=3 SV=2
Q4A5E0	Large ribosomal subunit protein uL11 OS=Mycoplasmopsis synoviae (strain 53) OX=262723 GN=rplK PE=3 SV=1
Q98RJ9	Large ribosomal subunit protein uL11 OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=rplK PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00687 all species →	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan
PF00298 all species →	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036769 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR028364 all species →	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR023674 all species →	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR006519 all species →	Family	Large ribosomal subunit protein uL11, bacterial-type	Interproscan
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR016095 all species →	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR020783 all species →	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan
IPR020785 all species →	Conserved_site	Large ribosomal subunit protein uL11, conserved site	Interproscan
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36427 all species →	54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02863	RP-L1, MRPL1, rplA; large subunit ribosomal protein L1	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.