Gene detail

Detailed information of evm.model.Contig123.89 in Hemicorallium imperiale

Genomic Location: Contig123:321631...322668
NR annotation: NQZ65882.1, ribonuclease R [Mycoplasmatales bacterium]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig123.89 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98QL0	Ribonuclease R OS=Mycoplasmopsis pulmonis (strain UAB CTIP) OX=272635 GN=rnr PE=3 SV=1
Q9WZI1	Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=rnr PE=3 SV=1
O32231	Ribonuclease R OS=Bacillus subtilis (strain 168) OX=224308 GN=rnr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF17876 all species →	CSD2	Cold shock domain	Domain	Interproscan
PF08206 all species →	OB_RNB	Ribonuclease B OB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR040476 all species →	Domain	RNase II/RNase R, cold shock domain	Interproscan
IPR013223 all species →	Domain	Ribonuclease B, N-terminal OB domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02945	RP-S1, rpsA; small subunit ribosomal protein S1	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.