Detailed information of evm.model.Contig125.116 in Hemicorallium imperiale

Genomic Location: Contig125:331312...332639
NR annotation: WP_135022017.1, ribonuclease PH [Carnobacterium divergens]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig125.116 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B5YFY8Ribonuclease PH OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=rph PE=3 SV=1
Q8EPJ5Ribonuclease PH OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=rph PE=3 SV=1
Q2LTS3Ribonuclease PH OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=rph PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0022266 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138
all species →		RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF01725
all species →		Ham1p_likeHam1 familyDomainInterproscan
PF03725
all species →		RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR001247
all species →		DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR029001
all species →		Homologous_superfamilyInosine triphosphate pyrophosphatase-likeInterproscan
IPR002381
all species →		FamilyRibonuclease PH, bacterial-typeInterproscan
IPR002637
all species →		FamilyRdgB/HAM1Interproscan
IPR020922
all species →		FamilydITP/XTP pyrophosphataseInterproscan
IPR036345
all species →		Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847
all species →		DomainExoribonuclease, phosphorolytic domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11067
all species →		INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0009022
all species →		Molecular FunctiontRNA nucleotidyltransferase activityInterproscan
GO:0009143
all species →		Biological Processnucleoside triphosphate catabolic processInterproscan
GO:0047429
all species →		Molecular Functionnucleoside triphosphate diphosphatase activityInterproscan
GO:0017111
all species →		Molecular Functionribonucleoside triphosphate phosphatase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig125.116.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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