Detailed information of evm.model.Contig125.126 in Hemicorallium imperiale

Genomic Location: Contig125:382437...385085
NR annotation: OED37624.1, alanine--tRNA ligase [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig125.126 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O67323Alanine--tRNA ligase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=alaS PE=1 SV=1
A9KG28Alanine--tRNA ligase OS=Coxiella burnetii (strain Dugway 5J108-111) OX=434922 GN=alaS PE=3 SV=1
Q83CQ6Alanine--tRNA ligase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=alaS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002669 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02272
all species →		DHHA1DHHA1 domainFamilyInterproscan
PF07973
all species →		tRNA_SADThreonyl and Alanyl tRNA synthetase second additional domainDomainInterproscan
PF01411
all species →		tRNA-synt_2ctRNA synthetases class II (A)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023033
all species →		FamilyAlanine-tRNA ligase, eukaryota/bacteriaInterproscan
IPR012947
all species →		DomainThreonyl/alanyl tRNA synthetase, SADInterproscan
IPR018162
all species →		Homologous_superfamilyAlanine-tRNA ligase, class IIc, anti-codon-binding domain superfamilyInterproscan
IPR003156
all species →		DomainDHHA1 domainInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR018165
all species →		DomainAlanyl-tRNA synthetase, class IIc, core domainInterproscan
IPR002318
all species →		FamilyAlanine-tRNA ligase, class IIcInterproscan
IPR018163
all species →		Homologous_superfamilyThreonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyInterproscan
IPR009000
all species →		Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR018164
all species →		DomainAlanyl-tRNA synthetase, class IIc, N-terminalInterproscan
IPR050058
all species →		FamilyAlanine--tRNA ligaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11777
all species →		ALANYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004813
all species →		Molecular Functionalanine-tRNA ligase activityInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0043039
all species →		Biological ProcesstRNA aminoacylationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006419
all species →		Biological Processalanyl-tRNA aminoacylationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0002161
all species →		Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01872AARS, alaS; alanyl-tRNA synthetaseEC:6.1.1.7
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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