Detailed information of evm.model.Contig125.3 in Hemicorallium imperiale

Genomic Location: Contig125:3428...4879
NR annotation: OED38370.1, glycine dehydrogenase (aminomethyl-transferring) [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig125.3 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B1HSN5Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Lysinibacillus sphaericus (strain C3-41) OX=444177 GN=gcvPB PE=3 SV=1
Q49XX9Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=gcvPB PE=3 SV=1
Q4L6N5Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=gcvPB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002709 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02347
all species →		GDC-PGlycine cleavage system P-proteinDomainInterproscan
PF21478
all species →		GcvP2_CGlycine dehydrogenase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR049315
all species →		DomainGlycine cleavage system P-protein, N-terminal domainInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR020581
all species →		FamilyGlycine cleavage system P proteinInterproscan
IPR049316
all species →		DomainGlycine dehydrogenase, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11773
all species →		GLYCINE DEHYDROGENASE, DECARBOXYLATINGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004375
all species →		Molecular Functionglycine dehydrogenase (decarboxylating) activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0005960
all species →		Cellular Componentglycine cleavage complexInterproscan
GO:0006546
all species →		Biological Processglycine catabolic processInterproscan
GO:0016594
all species →		Molecular Functionglycine bindingInterproscan
GO:0019464
all species →		Biological Processglycine decarboxylation via glycine cleavage systemInterproscan
GO:0030170
all species →		Molecular Functionpyridoxal phosphate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00283gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2EC:1.4.4.2
Lipoic acid metabolismko00785deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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