Detailed information of evm.model.Contig125.3 in Hemicorallium imperiale

Genomic Location: Contig125:3428...4879
NR annotation: OED38370.1, glycine dehydrogenase (aminomethyl-transferring) [PVC group bacterium (ex Bugula neritina AB1)]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B1HSN5Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Lysinibacillus sphaericus (strain C3-41) OX=444177 GN=gcvPB PE=3 SV=1
Q49XX9Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=gcvPB PE=3 SV=1
Q4L6N5Probable glycine dehydrogenase (decarboxylating) subunit 2 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=gcvPB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02347GDC-PGlycine cleavage system P-proteinDomainInterproscan
PF21478GcvP2_CGlycine dehydrogenase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR049315DomainGlycine cleavage system P-protein, N-terminal domainInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR020581FamilyGlycine cleavage system P proteinInterproscan
IPR049316DomainGlycine dehydrogenase, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11773GLYCINE DEHYDROGENASE, DECARBOXYLATINGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004375Molecular Functionglycine dehydrogenase (decarboxylating) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005960Cellular Componentglycine cleavage complexInterproscan
GO:0006546Biological Processglycine catabolic processInterproscan
GO:0016594Molecular Functionglycine bindingInterproscan
GO:0019464Biological Processglycine decarboxylation via glycine cleavage systemInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00283gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2EC:1.4.4.2
Lipoic acid metabolismko00785deepkoala

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