Gene detail

Detailed information of evm.model.Contig125.75 in Hemicorallium imperiale

Genomic Location: Contig125:191802...193971
NR annotation: OED35033.1, succinate--CoA ligase subunit alpha [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig125.75 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58643	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=sucD PE=1 SV=1
O67547	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus (strain VF5) OX=224324 GN=sucD PE=3 SV=1
P53591	Succinate--CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=sucD PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02629 all species →	CoA_binding	CoA binding domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF00285 all species →	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019810 all species →	Active_site	Citrate synthase active site	Interproscan
IPR033847 all species →	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR003781 all species →	Domain	CoA-binding	Interproscan
IPR016143 all species →	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan
IPR036969 all species →	Homologous_superfamily	Citrate synthase superfamily	Interproscan
IPR016142 all species →	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR002020 all species →	Family	Citrate synthase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR005810 all species →	Family	Succinyl-CoA ligase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42871 all species →	CITRATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Contig125.75.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.