Detailed information of evm.model.Contig125.86 in Hemicorallium imperiale

Genomic Location: Contig125:212708...213723
NR annotation: OED34687.1, tRNA (guanosine(37)-N1)-methyltransferase TrmD [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig125.86 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5D1J4tRNA (guanine-N(1)-)-methyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=trmD PE=3 SV=1
B5YFD5tRNA (guanine-N(1)-)-methyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=trmD PE=3 SV=1
A4J665tRNA (guanine-N(1)-)-methyltransferase OS=Desulforamulus reducens (strain ATCC BAA-1160 / DSM 100696 / MI-1) OX=349161 GN=trmD PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013301 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01746
all species →		tRNA_m1G_MTtRNA (Guanine-1)-methyltransferaseFamilyInterproscan
PF00886
all species →		Ribosomal_S16Ribosomal protein S16FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000307
all species →		FamilySmall ribosomal subunit protein bS16Interproscan
IPR002649
all species →		FamilytRNA (guanine-N1-)-methyltransferase TrmDInterproscan
IPR023148
all species →		Homologous_superfamilytRNA (guanine-N(1)-)-methyltransferase, C-terminal domain superfamilyInterproscan
IPR023803
all species →		Homologous_superfamilySmall ribosomal subunit protein bS16 domain superfamilyInterproscan
IPR020592
all species →		Conserved_siteSmall ribosomal subunit protein bS16, conserved siteInterproscan
IPR029026
all species →		Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR016009
all species →		DomaintRNA methyltransferase TRMD/TRM10-type domainInterproscan
IPR029028
all species →		Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46417
all species →		TRNA (GUANINE-N(1)-)-METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0052906
all species →		Molecular FunctiontRNA (guanine(37)-N1)-methyltransferase activityInterproscan
GO:0002939
all species →		Biological ProcesstRNA N1-guanine methylationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00554trmD; tRNA (guanine37-N1)-methyltransferaseEC:2.1.1.228
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP