Gene detail

Detailed information of evm.model.Contig128.27 in Hemicorallium imperiale

Genomic Location: Contig128:62624...64199
NR annotation: OED39034.1, 4-hydroxy-tetrahydrodipicolinate synthase [PVC group bacterium (ex Bugula neritina AB1)]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
B5YKK4	4-hydroxy-tetrahydrodipicolinate synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=dapA PE=3 SV=1
Q39Z67	4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=dapA PE=3 SV=1
B3E936	4-hydroxy-tetrahydrodipicolinate synthase OS=Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=dapA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00701	DHDPS	Dihydrodipicolinate synthetase family	Domain	Interproscan
PF01678	DAP_epimerase	Diaminopimelate epimerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002220	Family	DapA-like	Interproscan
IPR005263	Family	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR020625	Active_site	Schiff base-forming aldolase, active site	Interproscan
IPR001653	Family	Diaminopimelate epimerase, DapF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12128	DIHYDRODIPICOLINATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008840	Molecular Function	4-hydroxy-tetrahydrodipicolinate synthase activity	Interproscan
GO:0016829	Molecular Function	lyase activity	Interproscan
GO:0009089	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0008837	Molecular Function	diaminopimelate epimerase activity	Interproscan