Gene detail

Detailed information of evm.model.Contig128.28 in Hemicorallium imperiale

Genomic Location: Contig128:64317...66817
NR annotation: CAE7459499.1, argH [Symbiodinium pilosum]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig128.28 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2RG68	Argininosuccinate lyase OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=argH PE=3 SV=1
A5GDA7	Argininosuccinate lyase OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=argH PE=3 SV=1
B9M377	Argininosuccinate lyase OS=Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32) OX=316067 GN=argH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF14698 all species →	ASL_C2	Argininosuccinate lyase C-terminal	Domain	Interproscan
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR009049 all species →	Family	Argininosuccinate lyase	Interproscan
IPR029419 all species →	Domain	Argininosuccinate lyase, C-terminal	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR002986 all species →	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814 all species →	ARGININOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004056 all species →	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0042450 all species →	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0008836 all species →	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01586	lysA; diaminopimelate decarboxylase	EC:4.1.1.20	D-Amino acid metabolism	ko00470	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.