Genomic Location: Contig128:86032...87138
NR annotation: OED34842.1, phosphoserine transaminase [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Contig128.39 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q81BC0 | Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=serC PE=3 SV=1 |
| Q734W9 | Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=serC PE=3 SV=1 |
| Q6HGI0 | Phosphoserine aminotransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=serC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004732 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00266 all species → | Aminotran_5 | Aminotransferase class-V | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR022278 all species → | Family | Phosphoserine aminotransferase | Interproscan |
| IPR000192 all species → | Domain | Aminotransferase class V domain | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43247 all species → | PHOSPHOSERINE AMINOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004648 all species → | Molecular Function | O-phospho-L-serine:2-oxoglutarate aminotransferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006564 all species → | Biological Process | L-serine biosynthetic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00831 | serC, PSAT1; phosphoserine aminotransferase | EC:2.6.1.52 | Amino acid related enzymes | ko01007 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
