Detailed information of evm.model.Contig128.46 in Hemicorallium imperiale

Genomic Location: Contig128:111154...112149
NR annotation: OED34205.1, DNA-directed RNA polymerase subunit alpha [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig128.46 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A3DJK1DNA-directed RNA polymerase subunit alpha OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rpoA PE=1 SV=1
B3WAJ2DNA-directed RNA polymerase subunit alpha OS=Lacticaseibacillus casei (strain BL23) OX=543734 GN=rpoA PE=3 SV=1
Q035A9DNA-directed RNA polymerase subunit alpha OS=Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpoA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012164 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01000
all species →		RNA_pol_A_bacRNA polymerase Rpb3/RpoA insert domainDomainInterproscan
PF01193
all species →		RNA_pol_LRNA polymerase Rpb3/Rpb11 dimerisation domainDomainInterproscan
PF03118
all species →		RNA_pol_A_CTDBacterial RNA polymerase, alpha chain C terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036643
all species →		Homologous_superfamilyDNA-directed RNA polymerase, insert domain superfamilyInterproscan
IPR036603
all species →		Homologous_superfamilyRNA polymerase, RBP11-like subunitInterproscan
IPR011263
all species →		DomainDNA-directed RNA polymerase, RpoA/D/Rpb3-typeInterproscan
IPR011262
all species →		DomainDNA-directed RNA polymerase, insert domainInterproscan
IPR011773
all species →		FamilyDNA-directed RNA polymerase, alpha subunitInterproscan
IPR011260
all species →		DomainRNA polymerase, alpha subunit, C-terminalInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.Contig128.46. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0003899
all species →		Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03040rpoA; DNA-directed RNA polymerase subunit alphaEC:2.7.7.6
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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