Detailed information of evm.model.Contig128.54 in Hemicorallium imperiale

Genomic Location: Contig128:120532...121752
NR annotation: PYO34253.1, 30S ribosomal protein S3 [Gemmatimonadota bacterium]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig128.54 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B9DYB6Large ribosomal subunit protein uL16 OS=Clostridium kluyveri (strain NBRC 12016) OX=583346 GN=rplP PE=3 SV=1
A5N4Q4Large ribosomal subunit protein uL16 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NBRC 12016 / NCIMB 10680 / K1) OX=431943 GN=rplP PE=3 SV=1
B0TC63Large ribosomal subunit protein uL16 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) OX=498761 GN=rplP PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006636 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00252
all species →		Ribosomal_L16Ribosomal protein L16p/L10eDomainInterproscan
PF07650
all species →		KH_2KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000114
all species →		FamilyLarge ribosomal subunit protein uL16, bacterial-typeInterproscan
IPR047873
all species →		FamilyLarge ribosomal subunit protein uL16Interproscan
IPR004044
all species →		DomainK Homology domain, type 2Interproscan
IPR036920
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL16 superfamilyInterproscan
IPR015946
all species →		Homologous_superfamilyK homology domain-like, alpha/betaInterproscan
IPR020798
all species →		Conserved_siteLarge ribosomal subunit protein uL16, conserved siteInterproscan
IPR009019
all species →		Homologous_superfamilyK homology domain superfamily, prokaryotic typeInterproscan
IPR016180
all species →		DomainLarge ribosomal subunit protein uL16 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12220
all species →		50S/60S RIBOSOMAL PROTEIN L16Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0019843
all species →		Molecular FunctionrRNA bindingInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02878RP-L16, MRPL16, rplP; large subunit ribosomal protein L16-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP