Detailed information of evm.model.Contig128.55 in Hemicorallium imperiale

Genomic Location: Contig128:123468...124777
NR annotation: KAF1856026.1, hypothetical protein Lal_00003814 [Lupinus albus]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig128.55 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B0TC56Large ribosomal subunit protein uL3 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) OX=498761 GN=rplC PE=3 SV=1
Q9Z9L4Large ribosomal subunit protein uL3 OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rplC PE=3 SV=1
B8D0C4Large ribosomal subunit protein uL3 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) OX=373903 GN=rplC PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004676 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00573
all species →		Ribosomal_L4Ribosomal protein L4/L1 familyFamilyInterproscan
PF00297
all species →		Ribosomal_L3Ribosomal protein L3FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002136
all species →		FamilyLarge ribosomal subunit protein uL4Interproscan
IPR013005
all species →		FamilyLarge ribosomal subunit protein uL4-likeInterproscan
IPR019926
all species →		Conserved_siteLarge ribosomal subunit protein uL3, conserved siteInterproscan
IPR023574
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL4 domain superfamilyInterproscan
IPR019927
all species →		FamilyLarge ribosomal subunit protein uL3, bacterial/organelle-typeInterproscan
IPR009000
all species →		Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR000597
all species →		FamilyLarge ribosomal subunit protein uL3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11229
all species →		50S RIBOSOMAL PROTEIN L3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig128.55.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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