Detailed information of evm.model.Contig128.61 in Hemicorallium imperiale

Genomic Location: Contig128:133609...134493
NR annotation: OED34171.1, DNA-directed RNA polymerase subunit beta [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig128.61 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B9MQG5DNA-directed RNA polymerase subunit beta OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320) OX=521460 GN=rpoB PE=3 SV=1
Q8R7U6DNA-directed RNA polymerase subunit beta OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpoB PE=3 SV=1
Q2RFN9DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=rpoB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010783 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00562
all species →		RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF04560
all species →		RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007120
all species →		DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR037033
all species →		Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR007121
all species →		Conserved_siteRNA polymerase, beta subunit, conserved siteInterproscan
IPR007641
all species →		DomainRNA polymerase Rpb2, domain 7Interproscan
IPR015712
all species →		FamilyDNA-directed RNA polymerase, subunit 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20856
all species →		DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003899
all species →		Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0032549
all species →		Molecular Functionribonucleoside bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Contig128.61.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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