Gene detail

Detailed information of evm.model.Contig129.25 in Hemicorallium imperiale

Genomic Location: Contig129:75408...79156
NR annotation: OED34691.1, RNA polymerase sigma factor RpoD [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Contig129.25

ATGCAGACATCAACCATGGTTCAAAAAGATATTATTGAAGAATTGAAGTCAAAAATAGATATCGTTGATCTTATTGGAAGGTCTGTTCTTTTGAAGTCCTCTGGACAAAATTTTAAAGGACTTTGTCCCTTTCATAAAGAAAAGACACCTTCTTTTTTTGTCAATATTTCCAAGAAAATGTACTATTGTTTTGCTTGTTCCATTGGTGGAGATGTTTTTGATTTTGTGATGAATTATGATAGAGTTACTTTTCCAGAAGCTTTAGAAAAGTTAGCAGATTTGGTAGGGGTTGAACTTCCTAAAAATCGTAATTATGGTCGAAAAAATGATCAATCTCAGTATTTGTTGAAATTAGTGAATTCTGCACAAATTTATTTTCAAAAACTTTTTGTTCATCAGACGGTAGGGAAACAAGCAAGATTGTATTTGCAAAAAAGACAAATTAATGAGGAAAGCATAAAAAATTTTCAATTTGGCTATGCCTCTGTAGGAAGCTTTTCTCTTTTAAAAATGGCACAAAAAAAAGACATTCTTCCAGAGGATCTTCACAAGGCAGGATTGGTATTAAAAAAAAGAGCTTCCGAATATTATGATTTTTTTAGAAATAGACTTGTGATTCCTATTCATAATGCTTTTGGAATAGTTTTCGCTTTTGGAGGAAGATCTTTAACGAAGAGTATGGGTCCCAAATATCTCAATTCTTCTGAAAGCTCAATTTTTAATAAAAAACAAATTTTATTTGGATTTTATCGAGCCAAAAGTGCCATGATGGAAAGTAAAAAAGTTTTGCTTGTAGAAGGTTATATGGATTGTGTTAAAATGGTTCAGGAAGGATTTGATAATGTTGTAGCAACTTTAGGTTCTTCGTTAACTGAGGAACATGCGATTCTTTTAAAAAGATGTGTTGATATTGTGATCATTATTTTTGATAATGATGTTTCTGGGGTTAAAGCCACTTTGAGAGCCATTGATATTTTATTAGAGGCGGGGTTATTTGTGGAGGTTTTTTCTTTAAAGAAAGCCAAAGATCCAGATGAATTTTTGAATCGTTTTGGAAGGAGTGTTTTTGAACAACAAATGAATGCAGAAAAGATGGATTTTTTAGATTTTAAGGTTCAGTTTTTTTTTGAAAAATATCAGAGTAAAATAGAGCAATCGTTAGCAAAAGTGAAAATCTCTGAAAATCTTTTTGTATCTTTAAAAAAAATAGACAATGAGATTCTTCGGATGGATTATTTAAAAAAGTTGAGTCGTTTATTGGGTATGGAAGAAAAGATTATTTGTTCGGAATTTAAAAAAACATGCAATCGTTTTGAGAAAAAAATGATTGCTATAAAAGATAAAAAAACAGATCAATTTGCTGATCAAATAGATTCCTCAGAAAAAAATTTAGCCATTTTGGTTTTGAAAGAAAAAAAATATTGTGATATTGTTTTGGATTATGAAGAAAGATATGATATAGAATGGAAGAGCAGTATTTTTTTTAAAATTCTTCTTTTTTTTAAAAAGAAGAAAGAAAAAAGTGAAGAAATTTTGTTAGATTCTTTTAAAGATAATTTATTAAAAAATAAAACGGCTACTTTCTTGATCCAAGAAAGTATCTCTGATGAGAAAGCTCCTCAGATTTTTCAGGATTCATTGAAAAGGGATAAATTCGGAAGGTCTTTTATTATGACTAAAGATTCAGAAGGAAAGAAAACAAAGAAAAAATCTGAGGATAAGCTTGTTGTATCCAAAATAAAGAAAGAAAAGAAAACCATTGCTAAAAAAGTGAATGTGATCAAAGATGATTTTACAGAATCCATCGATTTTTCCAACAAACTTTTATATGCTTTTGAAGATTATGAGGACGAAGATCTTTTTCCCAATGTTTCTGTTGATGGTCTTTCAACCAAAGATAAAGAGACTGTCTCTCAAACAAAATCTTTTGACGACAAAAGCAAAGAGGACAATTTTCGATTCAAATTGACTTCGGATAAAGGGCGTAGTTGTATTGAAGAAATTGTTGCCATAGGCAAAGAAAAAGGGGTGATCACCTACAAAGAACTGAATCTGTTTATTAAAGATTTTGATATTAATGTTGAAGATCTTGATTTTCTTTTCAAAAAACTCACGGATAATCATGTTATCTATGTGGATTCTGATAAAAAAAGAGATTTGTTAATCAATCCCACTAAGAAAAAAAGTAAAAAAATATCAAAAACAAAAGATAGTTTTTTGATGACCACCTACACAGATTCTGTCAAAATGTATTTGAGAGAAATGGGTGAAATTAATCTTTTGATTCATGAAAAAGAGATCGCTTTAGCAATGAACATTGAAAAGGTTGAAATCAATTTGAAACAATCCTTATTTGTTGTTGGCTATGCTTTGAGAGAATTGAATCGTGTGGAATCTTTGATTCAAAAAGATATATTGATTATTGGGGACTATTTTAAAAATATTCCTGAGAAGAAAGAAGCAGATTTTTTTTCTGATTTTAGGATTCGTCTTGTAGAGATCAATTCTTTGCGTCGGAGAATTTTAATTTATAGAAACAAATTGAGGAAGACAGAAATAAAAGAACAAATGAATCGATACAAACATTTGGTTCAAACGGTGGGATCTGAGTTTTTAGAAAAATGTTCTGATTTTTCTTTGACGATTCTATTCAATAAAAAATTGCTAGATATTGTGTTTTTTCATTTCAACAAAGGGATGGAATTGAAAGCAGTTATTGACAAGGCAAAAGACAAAAATTGTCATCAATATCGTTTGGCGAGAAAATCTTTTTTGGAGATACAAAAAGACAGTCAACTGTCTTGGAGTGGGTTTCAAAAAGCTATCCATATGATTAAAAGACAGAAGCAGGAAATATCTTTATACAAGAAAGAGTTGATCAATGCCAATTTGCGTTTAGTTGTTTCTATTGCAAAGAAATACACAAGTCGAGGGCTTTCTTTTTTAGATCTTATCCAAGAAGGAAACATCGGTTTGATGAAGGCTGTCGATAAATTTGAGTATAAAAGGGGTTATAAATTCAGCACATACGCCACATGGTGGATTAGGCAGGCAATCACTCGATCGATTGCTGATCAGGCGAGAACGATTCGTATTCCTGTCCACATGATTGAAACGATCAACAAACTCACTCGATCGACACGACATCTTTTGCAAAAACTAGGAAGAGAACCCACCATTCAAGAAATTTCTAAAGAAATGGATCTTTCTGTGGAAAAATTGAGATCTATTATGAAAGTCTCGCAAGAGCCTATCTCTTTACAAACTCCGATAGGAGAAGAAGGGGAGAGTCTTTTTGGTGATTTTATTGAGGATAAATCAGTGGTTTCTCCAGCAAATGCAACAGCGTACTCTGTTCTTAAAGAACAAATCTCTAAAGTTTTGTCTTCTTTGAATGAAAGAGAAAAAAAGGTCTTAGAACTCCGTTTTGGGATTAAGGACGGTTGTTTGAGAACTTTGGAAGAAGTCGGAAAAGAGTTTAATGTGACAAGGGAGCGTGTGCGACAAATTGAGGCAAAAGCTCTCAGAAAACTTCGACATCCGAATCGCATTCAGCATTTGAAAAGTTTTTTAGAATGGGATATCATGAAGAACTGA

Transcript

evm.model.Contig129.25

ATGCAGACATCAACCATGGTTCAAAAAGATATTATTGAAGAATTGAAGtcaaaaatagatatcgttgaTCTTATTGGAAGGTCTGTTCTTTTGAAGTCCTCTGGACAAAATTTTAAAGGACTTTGTCCCTTTCATAAAGAAAAGACACCTTCTTTTTTTGTCAATATTTCCAAGAAAATGTACTATTGTTTTGCTTGTTCCATTGGTGGAGATGTTTTTGATTTTGTGATGAATTATGATAGAGTTACTTTTCCAGAAGCTTTAGAAAAGTTAGCAGATTTGGTAGGGGTTGAACTTCCTAAAAATCGTAATTATGGTCGAAAAAATGATCAATCTCAGTATTTGTTGAAATTAGTGAATTCTGCACaaatttattttcaaaaacTTTTTGTTCATCAGACGGTAGGGAAACAAGCAAGATTGTATTTGCAAAAAAGACAAATTAATGAGGAAAGCATAAAAAATTTTCAATTTGGCTATGCCTCTGTAGGAAGCTTTTCTCTTTTAAAAATGGCACAAAAAAAAGACATTCTTCCAGAGGATCTTCACAAGGCAGGATTGGTATTAAAAAAAAGAGCTTCCGAATATTATGATTTTTTTAGAAATAGACTTGTGATTCCTATTCATAATGCTTTTGGAATAGTTTtcgcttttggaggaagatctTTAACGAAGAGTATGGGTCCCAAATATCTCAATTCTTCTGAAAGCtcaatttttaataaaaaacaaattttatttgGATTTTATCGAGCCAAAAGTGCCATGATGGAAAGTAAAAAAGTTTTGCTTGTAGAAGGTTATATGGATTGTGTTAAAATGGTTCAGGAAGGATTTGATAATGTTGTAGCAACTTTAGGTTCTTCGTTAACTGAGGAACATGCGATTCTTTTAAAAAGATGTGTTGATATTGTGATCATTATTTTTGATAATGATGTTTCTGGGGTTAAAGCCACTTTGAGAGCCATTGATATTTTATTAGAGGCGGGGTTATTTGTGGAGGTTTTTTCTTTAAAGAAAGCCAAAGATCCAGATGAATTTTTGAATCGTTTTGGAAGGAGTGTTTTTGAACAACAAATGAATGCAGAAAAGATGGATTTTTTAGATTTTaaggttcagtttttttttgaaaaatatcagagtaaaatagagCAATCGTTAGCAAAAGTGAAAATCTCTGAAAATCTTTTTGtatctttaaaaaaaatagaCAATGAGATTCTTCGGATGGATTATTTAAAAAAGTTGAGTCGTTTATTGGGTATGGAAGAAAAGATTATTTGTTCggaatttaaaaaaacatgcaatcgttttgagaaaaaaatgattgctataaaagataaaaaaacaGATCAATTTGCTGATCAAATAGATTCCTCAGAAAAAAATTTAGCCATTTTggttttgaaagaaaaaaaatattgtgatATTGTTTTGGATTATGAAGAAAGATATGATATAGAATGGAAGAgcagtattttttttaaaattcttcttttttttaaaaagaagaaagaaaaaagtgaAGAAATTTTGTTAGATTCTTTTAaagataatttattaaaaaataaaacggCTACTTTCTTGATCCAAGAAAGTATCTCTGATGAGAAAGCTCCTCAGATTTTTCAGGATTCATTGAAAAGGGATAAATTCGGAAGGTCTTTTATTATGACTAAAGATTCAGAAGgaaagaaaacaaagaaaaaatctgAGGATAAGCTTGTTGTATccaaaataaagaaagaaaagaaaaccatTGCTAAAAAAGTGAATGTGATCAAAGATGATTTTACAGAATCCATCGATTTTTCCAACAAACTTTTATATGCTTTTGAAGATTATGAGGACGAAGATCTTTTTCCCAATGTTTCTGTTGATGGTCTTTCAACCAAAGATAAAGAGACTGTCTCTCAAACAAAATCTTTTGACGACAAAAGCAAAGAGGACAATTTTCGATTCAAATTGACTTCGGATAAAGGGCGTAGTTGTATTGAAGAAATTGTTGCCATAGGCAAAGAAAAAGGGGTGATCACCTACAAAGAACTGAATCTGTTTATTAAAGATTTTGATATTAATGTTGAAGATCTtgattttcttttcaaaaaactcACGGATAATCATGTTATCTATGTGGATTCTGATAAAAAAAGAGATTTGTTAATCAATCCCActaagaaaaaaagtaaaaaaatatcaaaaacaaAAGATAGTTTTTTGATGACCACCTACACAGATTCTGTCAAAATGTATTTGAGAGAAATGGGTGAAATTAATCTTTTGATTCATGAAAAAGAGATCGCTTTAGCAATGAacattgaaaaggttgaaatcAATTTGAAACAATCCTTATTTGTTGTTGGCTATGCTTTGAGAGAATTGAATCGTGTGGAATCTTTGATTCAAAAAGATATATTGATTATTGGggactattttaaaaatattcctGAGAAGAAAGAAGCAGATTTTTTTTCTGATTTTAGGATTCGTCTTGTAGAGATCAATTCTTTGCGTCGGAGAATTTTAATTTATAGAAACAAATTGAGGAAGACAGAAATAAAAGAACAAATGAATCGATACAAACATTTGGTTCAAACGGTGGGATCTGAGTTTTTAGAAAAATGTTCTGATTTTTCTTTGACGATTCTATTCAATAAAAAATTGCTAGATATTGTGTTTTTTCATTTCAACAAAGGGATGGAATTGAAAGCAGTTATTGACAAGGCAAAAGACAAAAATTGTCATCAATATCGTTTGGCGAGAAAATCTTTTTTGGAGATACAAAAAGACAGTCAACTGTCTTGGAGTGGGTTTCAAAAAGCTATCCATATGATTAAAAGACAGAAGCAGGAAATATCTTTATACAAGAAAGAGTTGATCAATGCCAATTTGCGTTTAGTTGTTTCTATTGCAAAGAAATACACAAGTCGAGGGCTTTCTTTTTTAGATCTTATCCAAGAAGGAAACATCGGTTTGATGAAGGCTGTCGATAAATTTGAGTATAAAAGGGGTTATAAATTCAGCACATACGCCACATGGTGGATTAGGCAGGCAATCACTCGATCGATTGCTGATCAGGCGAGAACGATTCGTATTCCTGTCCACATGATTGAAACGATCAACAAACTCACTCGATCGACACGACATCTTTTGCAAAAACTAGGAAGAGAACCCACCATTCAAGAAATTTCTAAAGAAATGGATCTTTCTGTGGAAAAATTGAGATCTATTATGAAAGTCTCGCAAGAGCCTATCTCTTTACAAACTCCGATAGGAGAAGAAGGGGAGAGTCTTTTTGGTGATTTTATTGAGGATAAATCAGTGGTTTCTCCAGCAAATGCAACAGCGTACTCTGTTCTTAAAGAACAAATCTCTAAAGTTTTGTCTTCTTTGAATGAAAGAGAAAAAAAGGTCTTAGAACTCCGTTTTGGGATTAAGGACGGTTGTTTGAGAACTTTGGAAGAAGTCGGAAAAGAGTTTAATGTGACAAGGGAGCGTGTGCGACAAATTGAGGCAAAAGCTCTCAGAAAACTTCGACATCCGAATCGCATTCAGCATTTGAAAAGTTTTTTAGAATGGGATATCATGAAGAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z7F0	RNA polymerase sigma factor SigA OS=Chlamydia pneumoniae OX=83558 GN=sigA PE=3 SV=1
P56835	RNA polymerase sigma factor SigA OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=sigA PE=3 SV=1
P18333	RNA polymerase sigma factor SigA OS=Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx) OX=272561 GN=sigA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013438 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00140 all species →	Sigma70_r1_2	Sigma-70 factor, region 1.2	Family	Interproscan
PF08275 all species →	DNAG_N	DNA primase catalytic core, N-terminal domain	Domain	Interproscan
PF04539 all species →	Sigma70_r3	Sigma-70 region 3	Family	Interproscan
PF01807 all species →	zf-CHC2	CHC2 zinc finger	Domain	Interproscan
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF03979 all species →	Sigma70_r1_1	Sigma-70 factor, region 1.1	Family	Interproscan
PF13155 all species →	Toprim_2	Toprim-like	Family	Interproscan
PF04545 all species →	Sigma70_r4	Sigma-70, region 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009042 all species →	Domain	RNA polymerase sigma-70 region 1.2	Interproscan
IPR000943 all species →	Domain	RNA polymerase sigma-70	Interproscan
IPR013264 all species →	Domain	DNA primase DNAG, catalytic core, N-terminal	Interproscan
IPR034151 all species →	Domain	Bacterial DnaG primase, TOPRIM domain	Interproscan
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR002694 all species →	Domain	Zinc finger, CHC2-type	Interproscan
IPR028630 all species →	Family	RNA polymerase sigma factor RpoD	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036977 all species →	Homologous_superfamily	DNA Primase, CHC2-type zinc finger	Interproscan
IPR007624 all species →	Domain	RNA polymerase sigma-70 region 3	Interproscan
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR007127 all species →	Domain	RNA polymerase sigma factor 70, region 1.1	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR030846 all species →	Family	DNA primase DnaG, bacteria	Interproscan
IPR037068 all species →	Homologous_superfamily	DNA primase, catalytic core, N-terminal domain superfamily	Interproscan
IPR012760 all species →	Domain	RNA polymerase sigma factor RpoD, C-terminal	Interproscan
IPR042189 all species →	Homologous_superfamily	Sigma-70 factor, region 1.1 superfamily	Interproscan
IPR006171 all species →	Domain	TOPRIM domain	Interproscan
IPR050219 all species →	Family	DnaG Primase	Interproscan
IPR006295 all species →	Domain	DNA primase, DnaG	Interproscan
IPR007630 all species →	Domain	RNA polymerase sigma-70 region 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30313 all species →	DNA PRIMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016987 all species →	Molecular Function	sigma factor activity	Interproscan
GO:0003896 all species →	Molecular Function	DNA primase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006269 all species →	Biological Process	DNA replication, synthesis of primer	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Contig129.25.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.