Detailed information of evm.model.Contig130.28 in Hemicorallium imperiale

Genomic Location: Contig130:66470...68281
NR annotation: OED34348.1, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG [PVC group bacterium (ex Bugula neritina AB1)]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Contig130.28 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8RAT8tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 1 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=mnmG1 PE=3 SV=1
Q6MA36tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=mnmG PE=3 SV=1
B0K8H8tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=mnmG PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0015227 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01134
all species →		GIDAGlucose inhibited division protein AFamilyInterproscan
PF13932
all species →		GIDA_CtRNA modifying enzyme MnmG/GidA C-terminal helical bundleDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040131
all species →		DomainMnmG, N-terminal domainInterproscan
IPR020595
all species →		Conserved_siteMnmG-related, conserved siteInterproscan
IPR044920
all species →		Homologous_superfamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamilyInterproscan
IPR002218
all species →		FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-relatedInterproscan
IPR004416
all species →		FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmGInterproscan
IPR036188
all species →		Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR047001
all species →		DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomainInterproscan
IPR026904
all species →		DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11806
all species →		GLUCOSE INHIBITED DIVISION PROTEIN AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0002098
all species →		Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan
GO:0050660
all species →		Molecular Functionflavin adenine dinucleotide bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03495gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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