Gene detail

Detailed information of evm.model.Contig130.33 in Hemicorallium imperiale

Genomic Location: Contig130:75924...78377
NR annotation: OED34369.1, DNA gyrase subunit B [PVC group bacterium (ex Bugula neritina AB1)]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Contig130.33 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13364	DNA gyrase subunit B OS=Pseudomonas putida OX=303 GN=gyrB PE=3 SV=2
Q5F5Z6	DNA gyrase subunit B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=gyrB PE=3 SV=1
P0A2I4	DNA gyrase subunit B OS=Salmonella typhi OX=90370 GN=gyrB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010595 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00204 all species →	DNA_gyraseB	DNA gyrase B	Domain	Interproscan
PF01751 all species →	Toprim	Toprim domain	Family	Interproscan
PF00986 all species →	DNA_gyraseB_C	DNA gyrase B subunit, carboxyl terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR006171 all species →	Domain	TOPRIM domain	Interproscan
IPR011557 all species →	Family	DNA gyrase, subunit B	Interproscan
IPR001241 all species →	Family	DNA topoisomerase, type IIA	Interproscan
IPR013760 all species →	Homologous_superfamily	DNA topoisomerase, type IIA-like domain superfamily	Interproscan
IPR013506 all species →	Domain	DNA topoisomerase, type IIA, subunit B, domain 2	Interproscan
IPR000565 all species →	Family	DNA topoisomerase, type IIA, subunit B	Interproscan
IPR013759 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, subunit B, C-terminal	Interproscan
IPR002288 all species →	Domain	DNA gyrase B subunit, C-terminal	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45866 all species →	DNA GYRASE/TOPOISOMERASE SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02470	gyrB; DNA gyrase subunit B	EC:5.6.2.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.